Genome ID:GCA_015654205.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 4 | 16.12 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDIOGKNB_1 | 3931158 | 3932327 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| HDIOGKNB_1 | 3709836 | 3711038 | blt | ARO:3003006 | blt | 98.75 | 100.00 | L32599.1 |
| HDIOGKNB_1 | 3691430 | 3692284 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| HDIOGKNB_1 | 1846773 | 1847693 | mphK | ARO:3004541 | mphK | 99.02 | 100.00 | CP010314.1 |
| HDIOGKNB_1 | 1833447 | 1834880 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.00 | JYFL01000006.1 |
| HDIOGKNB_1 | 1783766 | 1784359 | tmrB | ARO:3003059 | tmrB | 97.46 | 100.00 | AL009126.3 |
| HDIOGKNB_1 | 1530818 | 1532461 | vmlR | ARO:3004476 | vmlR | 98.35 | 100.00 | NC_000964.3 |
| HDIOGKNB_1 | 1235625 | 1238195 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.53 | 100.00 | AL009126.3 |
| HDIOGKNB_1 | 773081 | 773419 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| HDIOGKNB_1 | 772764 | 773081 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HDIOGKNB_1 | 1846773 | 1847693 | mph(K) | Spiramycin, Telithromycin | 99.35 | 100.00 | NC_000964 |
| HDIOGKNB_1 | 3691430 | 3692284 | aadK | Streptomycin | 98.71 | 100.00 | M26879 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDIOGKNB_1 | 1846776 | 1847693 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 99.02 | 100.00 | WP_003246254.1 |
| HDIOGKNB_1 | 3691430 | 3692281 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| HDIOGKNB_1 | 1530818 | 1532458 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.35 | 100.00 | WP_003234144.1 |
| HDIOGKNB_1 | 2143729 | 2144247 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 93.64 | 100.00 | WP_003242546.1 |
| HDIOGKNB_1 | 83033 | 85630 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.65 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| HDIOGKNB_1 | 2635336 | 2636517 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| HDIOGKNB_1 | 3058359 | 3059144 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.75 | 100.00 | NP_391080 |
| HDIOGKNB_1 | 4128994 | 4129635 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.69 | 100.00 | NP_390062 |
| HDIOGKNB_1 | 3059170 | 3060366 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.33 | 100.00 | NP_391079 |
| HDIOGKNB_1 | 138111 | 139874 | dep/capD | 0.0 | Capsule | Immune modulation | 99.32 | 100.00 | NP_389723 |
| HDIOGKNB_1 | 2636532 | 2636981 | capC | 0.0 | Capsule | Immune modulation | 99.11 | 100.00 | NP_391470 |
| HDIOGKNB_1 | 2637000 | 2638142 | capA | 0.0 | Capsule | Immune modulation | 98.78 | 100.00 | NP_391469 |
| HDIOGKNB_1 | 3063000 | 3070136 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.74 | 100.00 | NP_391076 |
| HDIOGKNB_1 | 3062042 | 3062980 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.40 | 100.00 | NP_391077 |
| HDIOGKNB_1 | 3060395 | 3062014 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.41 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HDIOGKNB_1 | 1982665 | 1981529 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| HDIOGKNB_1 | 2096391 | 2095522 | pdxS | 3.07e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| HDIOGKNB_1 | 461674 | 460898 | CodY | 3.35e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| HDIOGKNB_1 | 2795772 | 2795203 | ClpP | 2.49e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |