Genome ID:GCA_015845485.1 PPRS_table
 

Potential risk score of uploaded strain

ARGs VFs PGs PPRS
1277.35

CARD

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
JMMBABLD_20181218182267clbAARO:3002814clbA100.00100.00CP006845.1

Resfinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
JMMBABLD_20181218182253cfr(B)Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin89.0098.67KR610408

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
JMMBABLD_20181218182264clbA23S rRNA (adenine(2503)-C(8))-methyltransferase ClbAEXACTX100.00100.00WP_012116915.1

Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
JMMBABLD_18500466501647capB0.0CapsuleImmune modulation81.9699.66NP_391471
JMMBABLD_18500002500451capC5.69e-116CapsuleImmune modulation83.8199.78NP_391470

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
JMMBABLD_82834827212tufA0.0elongation factor Tu86.8195.69AHM69299
JMMBABLD_191273911870pdxS1.64e-152encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS84.8398.31ACE61268
JMMBABLD_14434030434806CodY9.09e-125nutrient-responsive regulator81.08100.00ACJ80679
JMMBABLD_10250597250989spxA16.23e-70redox-responsive transcription factor83.21100.00AAF21893
JMMBABLD_20158840159037CspA1.40e-31cold shock protein90.91100.00CAA62903
JMMBABLD_24148806149000CspD8.81e-28cold shock protein80.0098.48CAC99957
JMMBABLD_24148806149003CspB1.83e-27cold shock protein80.30100.00CAD00094
JMMBABLD_20158840159034CspR1.84e-26cold shock protein80.0098.48AAO82613
JMMBABLD_18138466137594lipA (SAUSA300_0829)2.29e-162lipoic acid synthetase80.8295.41ABD22039