Genome ID:GCA_015845485.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 2 | 7 | 7.35 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JMMBABLD_20 | 181218 | 182267 | clbA | ARO:3002814 | clbA | 100.00 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JMMBABLD_20 | 181218 | 182253 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 89.00 | 98.67 | KR610408 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JMMBABLD_20 | 181218 | 182264 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | EXACTX | 100.00 | 100.00 | WP_012116915.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JMMBABLD_18 | 500466 | 501647 | capB | 0.0 | Capsule | Immune modulation | 81.96 | 99.66 | NP_391471 |
| JMMBABLD_18 | 500002 | 500451 | capC | 5.69e-116 | Capsule | Immune modulation | 83.81 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JMMBABLD_8 | 28348 | 27212 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| JMMBABLD_19 | 12739 | 11870 | pdxS | 1.64e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| JMMBABLD_14 | 434030 | 434806 | CodY | 9.09e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| JMMBABLD_10 | 250597 | 250989 | spxA1 | 6.23e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| JMMBABLD_20 | 158840 | 159037 | CspA | 1.40e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| JMMBABLD_24 | 148806 | 149000 | CspD | 8.81e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| JMMBABLD_24 | 148806 | 149003 | CspB | 1.83e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| JMMBABLD_20 | 158840 | 159034 | CspR | 1.84e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| JMMBABLD_18 | 138466 | 137594 | lipA (SAUSA300_0829) | 2.29e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |