Genome ID:GCA_015880865.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 8 | 18.25 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COEDGJGN_17 | 594594 | 595448 | aadK | ARO:3002627 | aadK | 98.24 | 100.00 | AL009126.1 |
| COEDGJGN_17 | 565463 | 566665 | blt | ARO:3003006 | blt | 99.00 | 100.00 | L32599.1 |
| COEDGJGN_17 | 363054 | 364223 | bmr | ARO:3003007 | bmr | 99.23 | 100.00 | M33768.1 |
| COEDGJGN_26 | 221528 | 221866 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| COEDGJGN_26 | 221211 | 221528 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| COEDGJGN_21 | 156503 | 157096 | tmrB | ARO:3003059 | tmrB | 96.95 | 100.00 | AL009126.3 |
| COEDGJGN_21 | 105950 | 107389 | lmrB | ARO:3002813 | lmrB | 99.79 | 100.42 | JYFL01000006.1 |
| COEDGJGN_21 | 93136 | 94056 | mphK | ARO:3004541 | mphK | 100.00 | 100.00 | CP010314.1 |
| COEDGJGN_10 | 28779 | 30422 | vmlR | ARO:3004476 | vmlR | 98.90 | 100.00 | NC_000964.3 |
| COEDGJGN_5 | 27516 | 30086 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 100.00 | 100.00 | AL009126.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| COEDGJGN_21 | 93136 | 94056 | mph(K) | Spiramycin, Telithromycin | 99.78 | 100.00 | NC_000964 |
| COEDGJGN_17 | 594596 | 595448 | aadK | Streptomycin | 98.59 | 99.77 | M26879 |
| COEDGJGN_23 | 40527 | 41903 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 98.40 | 100.00 | D12567 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| COEDGJGN_21 | 93136 | 94053 | mphK | macrolide 2'-phosphotransferase MphK | EXACTX | 100.00 | 100.00 | WP_003246254.1 |
| COEDGJGN_10 | 28779 | 30419 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.90 | 100.00 | WP_003234144.1 |
| COEDGJGN_23 | 40527 | 41900 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.25 | 100.00 | WP_063856081.1 |
| COEDGJGN_17 | 594597 | 595448 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.24 | 100.00 | WP_003229862.1 |
| COEDGJGN_23 | 43908 | 44426 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 91.91 | 100.00 | WP_003242546.1 |
| COEDGJGN_17 | 59335 | 61932 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.94 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| COEDGJGN_17 | 163869 | 164510 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.84 | 100.00 | NP_390062 |
| COEDGJGN_15 | 525885 | 527066 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| COEDGJGN_15 | 113155 | 113940 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.62 | 100.00 | NP_391080 |
| COEDGJGN_15 | 524260 | 525402 | capA | 0.0 | Capsule | Immune modulation | 99.47 | 100.00 | NP_391469 |
| COEDGJGN_15 | 525421 | 525870 | capC | 0.0 | Capsule | Immune modulation | 99.33 | 100.00 | NP_391470 |
| COEDGJGN_15 | 109319 | 110257 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.25 | 100.00 | NP_391077 |
| COEDGJGN_15 | 111933 | 113129 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.25 | 100.00 | NP_391079 |
| COEDGJGN_17 | 9195 | 10958 | dep/capD | 0.0 | Capsule | Immune modulation | 99.15 | 100.00 | NP_389723 |
| COEDGJGN_15 | 102163 | 109299 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.77 | 100.00 | NP_391076 |
| COEDGJGN_15 | 110285 | 111904 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.03 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| COEDGJGN_11 | 34803 | 35939 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| COEDGJGN_8 | 11488 | 10619 | pdxS | 1.36e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| COEDGJGN_27 | 93768 | 94544 | CodY | 3.19e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| COEDGJGN_15 | 364536 | 365105 | ClpP | 3.25e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| COEDGJGN_26 | 373414 | 373022 | spxA1 | 4.16e-70 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| COEDGJGN_26 | 373414 | 373022 | spx | 2.48e-68 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| COEDGJGN_3 | 34887 | 34645 | SpoVG | 7.96e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| COEDGJGN_10 | 83317 | 83120 | CspA | 9.75e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| COEDGJGN_26 | 616577 | 616771 | CspB | 5.99e-27 | cold shock protein | 83.08 | 98.48 | CAD00094 |