Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 7 | 7.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IEBOJFGD_19 | 53967 | 55016 | clbA | ARO:3002814 | clbA | 99.71 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IEBOJFGD_19 | 53981 | 55016 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 89.09 | 98.67 | KR610408 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IEBOJFGD_19 | 53970 | 55016 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.71 | 100.00 | WP_012116915.1 |
| IEBOJFGD_12 | 137827 | 140421 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.00 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| IEBOJFGD_9 | 179568 | 180749 | capB | 0.0 | Capsule | Immune modulation | 81.79 | 99.66 | NP_391471 |
| IEBOJFGD_9 | 179104 | 179553 | capC | 1.67e-116 | Capsule | Immune modulation | 83.81 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IEBOJFGD_22 | 31975 | 33111 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| IEBOJFGD_21 | 4607 | 5476 | pdxS | 1.51e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| IEBOJFGD_12 | 342605 | 341829 | CodY | 4.70e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| IEBOJFGD_26 | 133117 | 133509 | spxA1 | 7.40e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| IEBOJFGD_19 | 75207 | 75010 | CspA | 1.28e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| IEBOJFGD_34 | 23620 | 23814 | CspD | 5.44e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| IEBOJFGD_34 | 23620 | 23817 | CspB | 1.13e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| IEBOJFGD_19 | 75207 | 75013 | CspR | 1.68e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| IEBOJFGD_5 | 136911 | 136039 | lipA (SAUSA300_0829) | 4.44e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |