Genome ID:GCA_016742875.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 2 | 3.61 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BHNGKDIG_44 | 7950 | 9326 | tet(L) | ARO:3000179 | tet(L) | 99.13 | 100.00 | M11036.1 |
| BHNGKDIG_44 | 5815 | 7740 | tet(M) | ARO:3000186 | tet(M) | 98.44 | 100.31 | AB039845.1 |
| BHNGKDIG_35 | 113 | 598 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| BHNGKDIG_44 | 7950 | 9326 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.78 | 100.00 | M29725 |
| BHNGKDIG_44 | 5815 | 7740 | tet(M) | Doxycycline, Tetracycline, Minocycline | 98.96 | 100.00 | AM990992 |
| BHNGKDIG_35 | 113 | 598 | lnu(A) | Lincomycin | 98.77 | 100.00 | M14039 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| BHNGKDIG_35 | 113 | 595 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| BHNGKDIG_44 | 7950 | 9323 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 99.34 | 100.00 | WP_001574277.1 |
| BHNGKDIG_44 | 5815 | 7737 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.06 | 100.00 | WP_000691727.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BHNGKDIG_16 | 27857 | 27150 | WalR | 3.24e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| BHNGKDIG_23 | 95662 | 95465 | CspR | 8.07e-28 | cold shock protein | 80.30 | 100.00 | AAO82613 |
| BHNGKDIG_23 | 95662 | 95468 | CspA | 2.67e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |