Genome ID:GCA_016887865.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 2 | 2.24 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LGAFNBCP_163 | 3 | 734 | TEM-247 | ARO:3007451 | TEM-247 | 97.95 | 85.31 | ON651488.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LGAFNBCP_163 | 1 | 735 | blaTEM-168 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin | 99.32 | 85.37 | FJ919776 |
| LGAFNBCP_163 | 1 | 735 | blaTEM-1A | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 99.32 | 85.37 | HM749966 |
| LGAFNBCP_163 | 1 | 735 | blaTEM-82 | Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Piperacillin, Piperacillin+Tazobactam, Ticarcillin, Ticarcillin+Clavulanic acid | 99.32 | 85.37 | AF427128 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LGAFNBCP_163 | 3 | 734 | blaTEM | TEM family class A beta-lactamase | PARTIAL_CONTIG_ENDX | 98.77 | 85.31 | WP_013279314.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LGAFNBCP_127 | 34362 | 35066 | WalR | 4.59e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| LGAFNBCP_20 | 350 | 153 | CspR | 5.07e-33 | cold shock protein | 87.88 | 100.00 | AAO82613 |