Genome ID:GCA_017601115.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 10 | 10 | 9 | 16.76 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGNDDPCD_1 | 281691 | 282545 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| NGNDDPCD_69 | 177706 | 179352 | vmlR | ARO:3004476 | vmlR | 98.54 | 100.18 | NC_000964.3 |
| NGNDDPCD_1 | 98453 | 99622 | bmr | ARO:3003007 | bmr | 99.23 | 100.00 | M33768.1 |
| NGNDDPCD_7 | 63703 | 64623 | mphK | ARO:3004541 | mphK | 97.39 | 100.00 | CP010314.1 |
| NGNDDPCD_7 | 50371 | 51810 | lmrB | ARO:3002813 | lmrB | 98.53 | 100.42 | JYFL01000006.1 |
| NGNDDPCD_80 | 39484 | 39801 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| NGNDDPCD_80 | 39146 | 39484 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| NGNDDPCD_29 | 8168 | 10738 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| NGNDDPCD_7 | 853 | 1446 | tmrB | ARO:3003059 | tmrB | 98.98 | 100.00 | AL009126.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NGNDDPCD_1 | 281691 | 282545 | aadK | Streptomycin | 98.71 | 100.00 | M26879 |
| NGNDDPCD_7 | 63703 | 64623 | mph(K) | Spiramycin, Telithromycin | 97.94 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NGNDDPCD_1 | 281694 | 282545 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| NGNDDPCD_69 | 177709 | 179352 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.54 | 100.00 | WP_003234144.1 |
| NGNDDPCD_7 | 63706 | 64623 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.39 | 100.00 | WP_003246254.1 |
| NGNDDPCD_8 | 3016 | 5613 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.17 | 100.00 | WP_087347987.1 |
| NGNDDPCD_36 | 36075 | 36407 | satA | streptothricin N-acetyltransferase SatA | PARTIALX | 92.79 | 64.16 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NGNDDPCD_5 | 118197 | 119378 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| NGNDDPCD_91 | 103686 | 104471 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| NGNDDPCD_5 | 119393 | 119842 | capC | 0.0 | Capsule | Immune modulation | 99.33 | 100.00 | NP_391470 |
| NGNDDPCD_91 | 92694 | 99830 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.27 | 100.00 | NP_391076 |
| NGNDDPCD_58 | 116751 | 117392 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.22 | 100.00 | NP_390062 |
| NGNDDPCD_91 | 102464 | 103660 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.17 | 100.00 | NP_391079 |
| NGNDDPCD_6 | 78266 | 80029 | dep/capD | 0.0 | Capsule | Immune modulation | 98.98 | 100.00 | NP_389723 |
| NGNDDPCD_5 | 119861 | 121003 | capA | 0.0 | Capsule | Immune modulation | 98.86 | 100.00 | NP_391469 |
| NGNDDPCD_91 | 99850 | 100788 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.83 | 100.00 | NP_391077 |
| NGNDDPCD_91 | 100816 | 102435 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.39 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NGNDDPCD_16 | 28021 | 26885 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| NGNDDPCD_41 | 11247 | 10378 | pdxS | 1.11e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| NGNDDPCD_2 | 61049 | 60273 | CodY | 1.09e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| NGNDDPCD_14 | 97464 | 96895 | ClpP | 1.85e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| NGNDDPCD_11 | 51396 | 51788 | spxA1 | 5.11e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| NGNDDPCD_11 | 51396 | 51788 | spx | 3.05e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| NGNDDPCD_19 | 20478 | 20720 | SpoVG | 7.49e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| NGNDDPCD_69 | 135259 | 135456 | CspA | 8.11e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| NGNDDPCD_58 | 104791 | 104597 | CspD | 1.17e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| NGNDDPCD_25 | 191405 | 191599 | CspB | 2.05e-27 | cold shock protein | 83.08 | 98.48 | CAD00094 |