Genome ID:GCA_018223605.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 2 | 3 | 4.69 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IPCAFADI_1 | 550413 | 551462 | clbA | ARO:3002814 | clbA | 92.26 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IPCAFADI_1 | 550413 | 551462 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 89.14 | 100.00 | KR610408 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IPCAFADI_1 | 550413 | 551459 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.26 | 100.00 | WP_012116915.1 |
| IPCAFADI_1 | 547425 | 547943 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 84.97 | 100.00 | WP_003242546.1 |
| IPCAFADI_1 | 1752776 | 1755373 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.29 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| IPCAFADI_1 | 3393790 | 3394971 | capB | 0.0 | Capsule | Immune modulation | 82.04 | 99.66 | NP_391471 |
| IPCAFADI_1 | 3393326 | 3393775 | capC | 1.43e-113 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IPCAFADI_1 | 133405 | 134541 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| IPCAFADI_1 | 18627 | 19496 | pdxS | 5.88e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| IPCAFADI_1 | 1545505 | 1546281 | CodY | 3.19e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |