Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 1 | 4 | 6.48 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LOFBCHLA_1 | 192247 | 193092 | Erm(34) | ARO:3000600 | Erm(34) | 96.80 | 100.00 | AY234334.1 |
| LOFBCHLA_4 | 113265 | 114317 | clbC | ARO:3002816 | clbC | 100.00 | 100.00 | AP006627.1 |
| LOFBCHLA_8 | 29102 | 29749 | Alkalihalobacillus clausii chloramphenicol acetyltransferase | ARO:3004452 | Acla_ACT_CHL | 88.21 | 94.30 | AY238971.1 |
| LOFBCHLA_19 | 28895 | 29800 | BCL-1 | ARO:3004749 | BCL-1 | 99.67 | 98.05 | EF540343.1 |
| LOFBCHLA_19 | 25711 | 26481 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 98.05 | 100.00 | EF540343.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LOFBCHLA_19 | 25711 | 26481 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 98.96 | 100.00 | AJ506108 |
| LOFBCHLA_8 | 29104 | 29780 | cat | Chloramphenicol | 97.23 | 98.40 | AY238971 |
| LOFBCHLA_1 | 192247 | 193079 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 95.92 | 98.46 | AY234334 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LOFBCHLA_4 | 113268 | 114317 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | EXACTX | 100.00 | 100.00 | WP_011245929.1 |
| LOFBCHLA_19 | 28895 | 29797 | blaBCL | BCL family class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_065825670.1 |
| LOFBCHLA_8 | 29102 | 29746 | catA | type A-10 chloramphenicol O-acetyltransferase | BLASTX | 99.53 | 100.00 | WP_035203840.1 |
| LOFBCHLA_19 | 25711 | 26478 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 98.05 | 100.00 | WP_035202393.1 |
| LOFBCHLA_1 | 192247 | 193086 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | BLASTX | 97.14 | 99.64 | WP_063844504.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| LOFBCHLA_14 | 46794 | 47444 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.69 | 100.00 | WP_011247375 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LOFBCHLA_20 | 41560 | 40424 | tufA | 0.0 | elongation factor Tu | 87.33 | 95.69 | AHM69299 |
| LOFBCHLA_15 | 43049 | 42807 | SpoVG | 2.70e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| LOFBCHLA_27 | 6178 | 6372 | CspA | 1.64e-30 | cold shock protein | 86.15 | 98.48 | CAA62903 |
| LOFBCHLA_1 | 651736 | 651927 | msaB | 1.98e-25 | cold shock protein | 81.25 | 96.97 | ABD22065 |
| LOFBCHLA_1 | 651739 | 651927 | CspB | 1.70e-24 | cold shock protein | 80.95 | 95.45 | CAD00094 |