Genome ID:GCA_018603605.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 9 | 18.71 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PANJDFEL_11 | 630940 | 631278 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| PANJDFEL_11 | 630623 | 630940 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| PANJDFEL_14 | 167601 | 168770 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| PANJDFEL_23 | 108041 | 108961 | mphK | ARO:3004541 | mphK | 97.71 | 100.00 | CP010314.1 |
| PANJDFEL_23 | 94708 | 96147 | lmrB | ARO:3002813 | lmrB | 99.37 | 100.42 | JYFL01000006.1 |
| PANJDFEL_23 | 45076 | 45669 | tmrB | ARO:3003059 | tmrB | 100.00 | 100.00 | AL009126.3 |
| PANJDFEL_3 | 32995 | 33849 | aadK | ARO:3002627 | aadK | 98.24 | 100.00 | AL009126.1 |
| PANJDFEL_22 | 28807 | 30450 | vmlR | ARO:3004476 | vmlR | 98.54 | 100.00 | NC_000964.3 |
| PANJDFEL_1 | 27279 | 29849 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| PANJDFEL_3 | 14334 | 15536 | blt | ARO:3003006 | blt | 99.25 | 100.00 | L32599.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PANJDFEL_4 | 36247 | 37623 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 98.84 | 100.00 | X08034 |
| PANJDFEL_3 | 32997 | 33849 | aadK | Streptomycin | 98.71 | 99.77 | M26879 |
| PANJDFEL_23 | 108041 | 108961 | mph(K) | Spiramycin, Telithromycin | 97.72 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PANJDFEL_4 | 36247 | 37620 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_003242953.1 |
| PANJDFEL_22 | 28807 | 30447 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.54 | 100.00 | WP_003234144.1 |
| PANJDFEL_3 | 32998 | 33849 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.24 | 100.00 | WP_003229862.1 |
| PANJDFEL_23 | 108044 | 108961 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.71 | 100.00 | WP_003246254.1 |
| PANJDFEL_4 | 39576 | 40094 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| PANJDFEL_14 | 463765 | 466362 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.60 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PANJDFEL_14 | 369575 | 370216 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.69 | 100.00 | NP_390062 |
| PANJDFEL_16 | 7645 | 8583 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.68 | 100.00 | NP_391077 |
| PANJDFEL_16 | 452268 | 453449 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| PANJDFEL_16 | 8611 | 10230 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.26 | 100.00 | NP_391078 |
| PANJDFEL_16 | 11481 | 12266 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.24 | 100.00 | NP_391080 |
| PANJDFEL_16 | 450643 | 451785 | capA | 0.0 | Capsule | Immune modulation | 98.95 | 100.00 | NP_391469 |
| PANJDFEL_16 | 10259 | 11455 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.91 | 100.00 | NP_391079 |
| PANJDFEL_14 | 511530 | 513293 | dep/capD | 0.0 | Capsule | Immune modulation | 98.87 | 100.00 | NP_389723 |
| PANJDFEL_16 | 489 | 7625 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.82 | 100.00 | NP_391076 |
| PANJDFEL_16 | 451804 | 452253 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PANJDFEL_5 | 31693 | 32829 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| PANJDFEL_12 | 11480 | 10611 | pdxS | 1.13e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| PANJDFEL_11 | 321078 | 320302 | CodY | 5.45e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| PANJDFEL_16 | 310851 | 311420 | ClpP | 2.81e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| PANJDFEL_21 | 109946 | 109554 | spxA1 | 2.46e-70 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| PANJDFEL_21 | 109946 | 109554 | spx | 1.47e-68 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| PANJDFEL_6 | 34633 | 34391 | SpoVG | 7.49e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| PANJDFEL_22 | 77181 | 76984 | CspA | 9.28e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| PANJDFEL_14 | 357613 | 357419 | CspD | 3.96e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| PANJDFEL_21 | 353192 | 353386 | CspB | 3.55e-27 | cold shock protein | 83.08 | 98.48 | CAD00094 |