Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 6 | 6.63 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KPJJHKEO_24 | 59709 | 60758 | clbA | ARO:3002814 | clbA | 97.42 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KPJJHKEO_24 | 59723 | 60758 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.03 | 98.67 | KR610408 |
| KPJJHKEO_12 | 377566 | 378942 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 87.36 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KPJJHKEO_24 | 59715 | 60758 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 97.70 | 99.71 | WP_012116915.1 |
| KPJJHKEO_12 | 377566 | 378936 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KPJJHKEO_22 | 79381 | 80562 | capB | 0.0 | Capsule | Immune modulation | 82.38 | 99.66 | NP_391471 |
| KPJJHKEO_22 | 78917 | 79366 | capC | 1.02e-112 | Capsule | Immune modulation | 83.37 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KPJJHKEO_27 | 31644 | 32780 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| KPJJHKEO_2 | 12449 | 11580 | pdxS | 2.57e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| KPJJHKEO_1 | 341719 | 340943 | CodY | 1.30e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| KPJJHKEO_1 | 836717 | 836325 | spxA1 | 2.37e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| KPJJHKEO_24 | 91531 | 91334 | CspA | 2.45e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| KPJJHKEO_24 | 91531 | 91337 | CspR | 3.20e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| KPJJHKEO_23 | 138039 | 137167 | lipA (SAUSA300_0829) | 1.37e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |