Genome ID:GCA_018966905.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 27 | 33 | 42.64 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CBEECMBO_10 | 20377 | 20970 | STER_RS06030 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011226149 |
| CBEECMBO_22 | 154366 | 155082 | STER_RS07085 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681442 |
| CBEECMBO_22 | 155083 | 156051 | STER_RS07090 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681443 |
| CBEECMBO_22 | 145566 | 147311 | STER_RS07045 | 0.0 | Capsule | Immune modulation | 99.94 | 100.00 | WP_011681434 |
| CBEECMBO_22 | 147313 | 149013 | STER_RS07050 | 0.0 | Capsule | Immune modulation | 99.94 | 100.00 | WP_041827753 |
| CBEECMBO_22 | 157042 | 158301 | STER_RS07100 | 0.0 | Capsule | Immune modulation | 99.92 | 100.00 | WP_011681445 |
| CBEECMBO_22 | 151977 | 153125 | STER_RS07070 | 0.0 | Capsule | Immune modulation | 99.91 | 100.00 | WP_011681439 |
| CBEECMBO_10 | 19508 | 20377 | rfbA | 0.0 | Capsule | Immune modulation | 99.89 | 100.00 | WP_011681286 |
| CBEECMBO_22 | 151039 | 151980 | STER_RS07065 | 0.0 | Capsule | Immune modulation | 99.89 | 100.00 | WP_011681438 |
| CBEECMBO_22 | 153244 | 154020 | STER_RS07075 | 0.0 | Capsule | Immune modulation | 99.87 | 100.00 | WP_011681440 |
| CBEECMBO_22 | 149031 | 150233 | STER_RS07055 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011681436 |
| CBEECMBO_10 | 20377 | 20970 | STR_RS05880 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011226149 |
| CBEECMBO_22 | 147313 | 149013 | STR_RS06890 | 0.0 | Capsule | Immune modulation | 99.77 | 100.00 | WP_041827077 |
| CBEECMBO_10 | 20377 | 20970 | STU_RS15260 | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | WP_011226149 |
| CBEECMBO_22 | 150233 | 151039 | STER_RS07060 | 0.0 | Capsule | Immune modulation | 99.63 | 100.00 | WP_011681437 |
| CBEECMBO_22 | 156069 | 157045 | STER_RS07095 | 0.0 | Capsule | Immune modulation | 99.59 | 99.90 | WP_011681444 |
| CBEECMBO_54 | 94093 | 95751 | fbp54 | 0.0 | FBPs | Adherence | 99.58 | 100.00 | WP_011227179 |
| CBEECMBO_22 | 149031 | 150233 | STR_RS06895 | 0.0 | Capsule | Immune modulation | 99.58 | 100.00 | WP_011227428 |
| CBEECMBO_22 | 151039 | 151980 | STR_RS06905 | 0.0 | Capsule | Immune modulation | 99.36 | 100.00 | WP_011227430 |
| CBEECMBO_22 | 151977 | 153125 | STR_RS06910 | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | WP_011227431 |
| CBEECMBO_22 | 150233 | 151039 | STR_RS06900 | 0.0 | Capsule | Immune modulation | 99.13 | 100.00 | WP_011227429 |
| CBEECMBO_43 | 78692 | 79660 | cbpD | 0.0 | Autolysin | Exoenzyme | 98.86 | 100.00 | WP_082302295 |
| CBEECMBO_75 | 68152 | 68883 | STER_RS05315 | 0.0 | Capsule | Immune modulation | 98.63 | 100.00 | WP_011681176 |
| CBEECMBO_75 | 1374 | 2167 | cshA | 0.0 | Cell surface hydrophobicity proteins | Adherence | 98.36 | 100.25 | - |
| CBEECMBO_22 | 145566 | 147311 | STR_RS06885 | 0.0 | Capsule | Immune modulation | 98.28 | 100.00 | WP_011227426 |
| CBEECMBO_75 | 68152 | 68883 | STR_RS05260 | 0.0 | Capsule | Immune modulation | 98.22 | 100.00 | WP_011227248 |
| CBEECMBO_75 | 68152 | 68883 | STU_RS14645 | 0.0 | Capsule | Immune modulation | 98.09 | 100.00 | WP_011226048 |
| CBEECMBO_75 | 69594 | 70334 | STER_RS05305 | 0.0 | Capsule | Immune modulation | 97.98 | 100.00 | WP_011681174 |
| CBEECMBO_75 | 66691 | 68151 | STER_RS05320 | 0.0 | Capsule | Immune modulation | 97.95 | 100.00 | WP_011681177 |
| CBEECMBO_75 | 69594 | 70334 | STU_RS14635 | 0.0 | Capsule | Immune modulation | 97.84 | 100.00 | WP_011226046 |
| CBEECMBO_7 | 14652 | 15413 | srtA | 0.0 | Sortase A | Exoenzyme | 97.64 | 100.00 | - |
| CBEECMBO_22 | 158420 | 159271 | rfbD | 0.0 | Capsule | Immune modulation | 97.42 | 100.00 | WP_014621820 |
| CBEECMBO_75 | 69594 | 70329 | STR_RS05250 | 0.0 | Capsule | Immune modulation | 97.42 | 98.13 | WP_011227246 |
| CBEECMBO_75 | 66691 | 68151 | STU_RS14650 | 0.0 | Capsule | Immune modulation | 96.92 | 100.21 | WP_011226049 |
| CBEECMBO_75 | 68892 | 69584 | STR_RS05255 | 0.0 | Capsule | Immune modulation | 96.83 | 100.00 | WP_011227247 |
| CBEECMBO_75 | 68892 | 69584 | STU_RS14640 | 0.0 | Capsule | Immune modulation | 96.83 | 100.00 | WP_011226047 |
| CBEECMBO_75 | 66691 | 68151 | STR_RS05265 | 0.0 | Capsule | Immune modulation | 95.96 | 100.21 | WP_041827043 |
| CBEECMBO_75 | 70391 | 71756 | STER_RS05300 | 0.0 | Capsule | Immune modulation | 94.66 | 99.85 | WP_011681173 |
| CBEECMBO_75 | 70391 | 71758 | STU_RS14630 | 0.0 | Capsule | Immune modulation | 94.08 | 100.00 | WP_011226045 |
| CBEECMBO_75 | 68892 | 69584 | STER_RS05310 | 0.0 | Capsule | Immune modulation | 91.78 | 100.00 | WP_011681175 |
| CBEECMBO_11 | 120502 | 121805 | eno | 0.0 | Streptococcal enolase | Exoenzyme | 88.10 | 99.46 | WP_000022832 |
| CBEECMBO_13 | 129 | 1139 | plr/gapA | 0.0 | Streptococcal plasmin receptor/GAPDH | Adherence | 86.54 | 99.41 | WP_002986042 |
| CBEECMBO_22 | 150233 | 151039 | SGO_RS05020 | 0.0 | Capsule | Immune modulation | 83.27 | 100.00 | WP_012000440 |
| CBEECMBO_2 | 2339 | 3622 | tig/ropA | 0.0 | Trigger factor | Stress survival | 80.65 | 99.77 | WP_000107753 |
| CBEECMBO_10 | 21399 | 22445 | rfbB | 0.0 | Capsule | Immune modulation | 80.61 | 100.00 | WP_009659423 |
| CBEECMBO_22 | 149496 | 150233 | SGO_RS05025 | 0.0 | Capsule | Immune modulation | 84.96 | 60.29 | WP_012000441 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CBEECMBO_7 | 18100 | 19083 | ldh(Sp_1220) | 0.0 | L-lactate dehydrogenase | 94.82 | 100.00 | AAK75326 |
| CBEECMBO_11 | 14093 | 13020 | MntE | 0.0 | manganese homeostasis | 94.41 | 99.72 | ABF32167 |
| CBEECMBO_33 | 15598 | 13295 | pfl2(Sp_0459) | 0.0 | formate acetyltransferase | 92.97 | 99.22 | AAK74619 |
| CBEECMBO_11 | 204050 | 203082 | spr0084 | 0.0 | pathogenitcity related | 92.57 | 98.48 | AAK98888 |
| CBEECMBO_22 | 50724 | 52205 | SPD_0310 | 0.0 | UPF0371 protein SPD_0310 | 92.11 | 100.00 | ABJ54480 |
| CBEECMBO_9 | 11363 | 9117 | metE | 0.0 | methionine biosynthesis enzymes | 91.99 | 100.00 | AAK74738 |
| CBEECMBO_6 | 40475 | 41473 | recA | 0.0 | DNA recombination and repair | 91.29 | 85.82 | AAL00560 |
| CBEECMBO_6 | 4362 | 5333 | prsA2 | 0.0 | ribose-phosphate pyrophosphokinase | 90.12 | 100.00 | ABF36968 |
| CBEECMBO_33 | 129606 | 130757 | potA | 0.0 | ABC transporter ATP-binding protein-spermidine/putrescine transport | 89.32 | 99.74 | AAL00050 |
| CBEECMBO_22 | 172310 | 170322 | uvrB | 0.0 | excinuclease ABC, B subunit | 88.84 | 100.00 | AE014259_2 |
| CBEECMBO_7 | 1901 | 171 | ptsI | 0.0 | phosphoenolpyruvate-protein phosphotransferase | 88.04 | 100.00 | AAK34199 |
| CBEECMBO_74 | 27273 | 28751 | IMPDH | 0.0 | inosine-5'-monophosphate dehydrogenase | 87.63 | 100.00 | ADE32434 |
| CBEECMBO_11 | 121805 | 120504 | Eno | 0.0 | enolase | 86.21 | 99.77 | ABP90468 |
| CBEECMBO_74 | 42459 | 44351 | gidA | 0.0 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme | 85.89 | 98.90 | ABP91129 |
| CBEECMBO_9 | 6193 | 7902 | PGM | 0.0 | phosphoglucomutase | 84.06 | 99.65 | ACH87041 |
| CBEECMBO_1 | 18866 | 19876 | pdh | 0.0 | pyruvate dehydrogenase | 83.09 | 99.70 | ABP91006 |
| CBEECMBO_54 | 68730 | 70091 | mnmE | 0.0 | central tRNA-modifying GTPase | 82.24 | 99.56 | ABP90420 |
| CBEECMBO_1 | 69198 | 67306 | PepO | 0.0 | endopeptidase | 80.19 | 100.00 | ABF32980 |
| CBEECMBO_11 | 136241 | 135351 | bglB | 6.91e-180 | putative phospho--glucosidase | 88.89 | 99.66 | AAK33487 |
| CBEECMBO_3 | 14626 | 13688 | SP_0676 | 7.46e-169 | transcription facot | 81.15 | 97.20 | AAK74821 |
| CBEECMBO_9 | 8925 | 8068 | metF | 1.50e-166 | methionine biosynthesis enzymes | 86.36 | 99.31 | AAK74739 |
| CBEECMBO_75 | 29854 | 30558 | covR | 1.97e-132 | responder protein | 85.53 | 100.00 | AAK71319 |
| CBEECMBO_22 | 31751 | 31080 | rr01 | 2.81e-126 | response regulator | 84.38 | 99.56 | CAB54566 |
| CBEECMBO_9 | 2238 | 1570 | CiaR | 1.52e-124 | two-component response regulator | 86.10 | 99.55 | AAK74935 |
| CBEECMBO_75 | 29854 | 30558 | walR | 8.28e-123 | DNA-binding response regulator | 82.13 | 100.00 | ANC99504 |
| CBEECMBO_9 | 2238 | 1567 | ciaR | 2.06e-122 | two component system response regulator | 83.93 | 99.12 | AIK75708 |
| CBEECMBO_73 | 91828 | 92514 | CovR | 3.45e-118 | serves to repress GAS virulence factor-encoding genes | 80.35 | 100.00 | ACE75886 |
| CBEECMBO_6 | 41749 | 42123 | SpxA2 | 2.64e-71 | transcriptional regulator | 91.20 | 94.70 | ERL21461 |
| CBEECMBO_54 | 57367 | 56966 | SpxA1 | 2.21e-67 | transcriptional regulator | 80.60 | 100.00 | ERL19273 |
| CBEECMBO_8 | 25593 | 25306 | spr0479 | 3.02e-49 | essential gene | 86.46 | 98.97 | AAK99283 |
| CBEECMBO_43 | 120538 | 120792 | spr1327 | 2.09e-45 | essential gene | 95.29 | 100.00 | AAL00131 |
| CBEECMBO_74 | 76086 | 75823 | spr0175 | 3.53e-42 | pathogenitcity related | 84.09 | 100.00 | AAK98979 |
| CBEECMBO_74 | 75259 | 74993 | spr0177 | 7.73e-34 | essential gene | 84.27 | 88.12 | AAK98981 |
| CBEECMBO_2 | 3780 | 4280 | RopE (M5005_Spy_1611) | 1.67e-76 | probable DNA-directed RNA polymerase subunit delta | 81.44 | 87.43 | AAK34603 |
| CBEECMBO_33 | 15598 | 13301 | PFL (B9H01_RS01125) | 0.0 | formate C-acetyltransferase | 82.94 | 98.08 | MYN69560 |
| CBEECMBO_1 | 54729 | 53710 | ilvC (SPD_0406) | 0.0 | ketol-acid reductoisomerase (NADP(+)) | 96.47 | 100.00 | ABJ55451 |