Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 1 | 4 | 4.24 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MDDHOLLC_1 | 3562773 | 3564149 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 86.86 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDDHOLLC_1 | 3562779 | 3564149 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MDDHOLLC_1 | 499819 | 501000 | capB | 0.0 | Capsule | Immune modulation | 82.38 | 99.66 | NP_391471 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MDDHOLLC_1 | 1117637 | 1118773 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| MDDHOLLC_1 | 1002853 | 1003722 | pdxS | 2.14e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| MDDHOLLC_1 | 2595658 | 2596434 | CodY | 4.69e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| MDDHOLLC_1 | 147176 | 146304 | lipA (SAUSA300_0829) | 1.28e-161 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |