Genome ID:GCA_019396925.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 4 | 4.90 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GAJDFOMF_1 | 2354352 | 2355401 | clbA | ARO:3002814 | clbA | 99.71 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GAJDFOMF_1 | 2354352 | 2355387 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.90 | 98.67 | KR610408 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GAJDFOMF_1 | 2354352 | 2355398 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.71 | 100.00 | WP_012116915.1 |
| GAJDFOMF_1 | 3637230 | 3639824 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.00 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GAJDFOMF_1 | 1326135 | 1327316 | capB | 0.0 | Capsule | Immune modulation | 81.96 | 99.66 | NP_391471 |
| GAJDFOMF_1 | 1325671 | 1326120 | capC | 6.94e-117 | Capsule | Immune modulation | 84.03 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GAJDFOMF_1 | 1946345 | 1947481 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| GAJDFOMF_1 | 1831442 | 1832311 | pdxS | 1.01e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| GAJDFOMF_1 | 3435041 | 3435817 | CodY | 4.80e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| GAJDFOMF_1 | 961293 | 960421 | lipA (SAUSA300_0829) | 8.86e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |