Genome ID:GCA_019449875.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 28 | 33 | 43.28 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MGMDCLKP_13 | 10132 | 11001 | rfbA | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681286 |
| MGMDCLKP_13 | 9539 | 10132 | STER_RS06030 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011226149 |
| MGMDCLKP_16 | 17945 | 19690 | STER_RS07045 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681434 |
| MGMDCLKP_16 | 19692 | 21392 | STER_RS07050 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_041827753 |
| MGMDCLKP_16 | 21410 | 22612 | STER_RS07055 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681436 |
| MGMDCLKP_16 | 22612 | 23418 | STER_RS07060 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681437 |
| MGMDCLKP_16 | 23418 | 24359 | STER_RS07065 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681438 |
| MGMDCLKP_16 | 24356 | 25504 | STER_RS07070 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681439 |
| MGMDCLKP_16 | 25623 | 26399 | STER_RS07075 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681440 |
| MGMDCLKP_16 | 26745 | 27461 | STER_RS07085 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681442 |
| MGMDCLKP_16 | 27462 | 28430 | STER_RS07090 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681443 |
| MGMDCLKP_16 | 29422 | 30681 | STER_RS07100 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681445 |
| MGMDCLKP_16 | 28448 | 29425 | STER_RS07095 | 0.0 | Capsule | Immune modulation | 99.90 | 100.00 | WP_011681444 |
| MGMDCLKP_13 | 9539 | 10132 | STR_RS05880 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011226149 |
| MGMDCLKP_16 | 19692 | 21392 | STR_RS06890 | 0.0 | Capsule | Immune modulation | 99.71 | 100.00 | WP_041827077 |
| MGMDCLKP_13 | 9539 | 10132 | STU_RS15260 | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | WP_011226149 |
| MGMDCLKP_9 | 13047 | 14705 | fbp54 | 0.0 | FBPs | Adherence | 99.58 | 100.00 | WP_011227179 |
| MGMDCLKP_1 | 20790 | 21629 | cbpD | 0.0 | Autolysin | Exoenzyme | 99.52 | 100.00 | WP_011226733 |
| MGMDCLKP_16 | 22612 | 23418 | STR_RS06900 | 0.0 | Capsule | Immune modulation | 99.50 | 100.00 | WP_011227429 |
| MGMDCLKP_16 | 23418 | 24359 | STR_RS06905 | 0.0 | Capsule | Immune modulation | 99.47 | 100.00 | WP_011227430 |
| MGMDCLKP_16 | 21410 | 22612 | STR_RS06895 | 0.0 | Capsule | Immune modulation | 99.42 | 100.00 | WP_011227428 |
| MGMDCLKP_16 | 24356 | 25504 | STR_RS06910 | 0.0 | Capsule | Immune modulation | 99.22 | 100.00 | WP_011227431 |
| MGMDCLKP_11 | 17912 | 18643 | STER_RS05315 | 0.0 | Capsule | Immune modulation | 98.50 | 100.00 | WP_011681176 |
| MGMDCLKP_11 | 17912 | 18643 | STU_RS14645 | 0.0 | Capsule | Immune modulation | 98.50 | 100.00 | WP_011226048 |
| MGMDCLKP_11 | 17912 | 18643 | STR_RS05260 | 0.0 | Capsule | Immune modulation | 98.36 | 100.00 | WP_011227248 |
| MGMDCLKP_16 | 17945 | 19690 | STR_RS06885 | 0.0 | Capsule | Immune modulation | 98.22 | 100.00 | WP_011227426 |
| MGMDCLKP_11 | 18644 | 20104 | STER_RS05320 | 0.0 | Capsule | Immune modulation | 97.81 | 100.00 | WP_011681177 |
| MGMDCLKP_13 | 44903 | 45664 | srtA | 0.0 | Sortase A | Exoenzyme | 97.77 | 100.00 | - |
| MGMDCLKP_11 | 18644 | 20104 | STU_RS14650 | 0.0 | Capsule | Immune modulation | 97.06 | 100.21 | WP_011226049 |
| MGMDCLKP_11 | 16461 | 17201 | STU_RS14635 | 0.0 | Capsule | Immune modulation | 97.03 | 100.00 | WP_011226046 |
| MGMDCLKP_11 | 16461 | 17201 | STER_RS05305 | 0.0 | Capsule | Immune modulation | 96.90 | 100.00 | WP_011681174 |
| MGMDCLKP_16 | 30800 | 31651 | rfbD | 0.0 | Capsule | Immune modulation | 96.83 | 100.00 | WP_014621820 |
| MGMDCLKP_11 | 16466 | 17201 | STR_RS05250 | 0.0 | Capsule | Immune modulation | 96.47 | 98.13 | WP_011227246 |
| MGMDCLKP_11 | 18644 | 20104 | STR_RS05265 | 0.0 | Capsule | Immune modulation | 96.23 | 100.21 | WP_041827043 |
| MGMDCLKP_11 | 15040 | 16405 | STER_RS05300 | 0.0 | Capsule | Immune modulation | 95.39 | 99.85 | WP_011681173 |
| MGMDCLKP_11 | 17211 | 17903 | STR_RS05255 | 0.0 | Capsule | Immune modulation | 95.25 | 99.86 | WP_011227247 |
| MGMDCLKP_11 | 17211 | 17903 | STU_RS14640 | 0.0 | Capsule | Immune modulation | 95.25 | 99.86 | WP_011226047 |
| MGMDCLKP_11 | 15038 | 16405 | STU_RS14630 | 0.0 | Capsule | Immune modulation | 94.37 | 100.00 | WP_011226045 |
| MGMDCLKP_11 | 84536 | 85314 | cshA | 0.0 | Cell surface hydrophobicity proteins | Adherence | 93.19 | 99.37 | - |
| MGMDCLKP_11 | 17211 | 17903 | STER_RS05310 | 0.0 | Capsule | Immune modulation | 89.61 | 100.00 | WP_011681175 |
| MGMDCLKP_34 | 95548 | 96851 | eno | 0.0 | Streptococcal enolase | Exoenzyme | 88.10 | 99.46 | WP_000022832 |
| MGMDCLKP_19 | 123 | 1133 | plr/gapA | 0.0 | Streptococcal plasmin receptor/GAPDH | Adherence | 86.54 | 99.41 | WP_002986042 |
| MGMDCLKP_16 | 22612 | 23418 | SGO_RS05020 | 0.0 | Capsule | Immune modulation | 82.90 | 100.00 | WP_012000440 |
| MGMDCLKP_29 | 6383 | 7666 | tig/ropA | 0.0 | Trigger factor | Stress survival | 80.73 | 99.77 | WP_000107753 |
| MGMDCLKP_13 | 8064 | 9110 | rfbB | 0.0 | Capsule | Immune modulation | 80.61 | 100.00 | WP_009659423 |
| MGMDCLKP_11 | 5507 | 6090 | SPD_RS01775 | 7.65e-148 | Capsule | Immune modulation | 83.11 | 96.04 | WP_001819836 |
| MGMDCLKP_16 | 21875 | 22612 | SGO_RS05025 | 0.0 | Capsule | Immune modulation | 84.96 | 60.29 | WP_012000441 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| MGMDCLKP_2 | 27707 | 28780 | MntE | 0.0 | manganese homeostasis | 94.41 | 99.72 | ABF32167 |
| MGMDCLKP_13 | 48351 | 49334 | ldh(Sp_1220) | 0.0 | L-lactate dehydrogenase | 94.21 | 100.00 | AAK75326 |
| MGMDCLKP_34 | 13309 | 14277 | spr0084 | 0.0 | pathogenitcity related | 93.19 | 98.48 | AAK98888 |
| MGMDCLKP_17 | 57612 | 59915 | pfl2(Sp_0459) | 0.0 | formate acetyltransferase | 92.97 | 99.22 | AAK74619 |
| MGMDCLKP_13 | 128568 | 130049 | SPD_0310 | 0.0 | UPF0371 protein SPD_0310 | 92.71 | 100.00 | ABJ54480 |
| MGMDCLKP_3 | 6177 | 8423 | metE | 0.0 | methionine biosynthesis enzymes | 91.99 | 100.00 | AAK74738 |
| MGMDCLKP_12 | 11076 | 12074 | recA | 0.0 | DNA recombination and repair | 91.29 | 85.82 | AAL00560 |
| MGMDCLKP_1 | 4306 | 5277 | prsA2 | 0.0 | ribose-phosphate pyrophosphokinase | 90.12 | 100.00 | ABF36968 |
| MGMDCLKP_16 | 80578 | 79427 | potA | 0.0 | ABC transporter ATP-binding protein-spermidine/putrescine transport | 89.32 | 99.74 | AAL00050 |
| MGMDCLKP_16 | 44688 | 42700 | uvrB | 0.0 | excinuclease ABC, B subunit | 88.84 | 100.00 | AE014259_2 |
| MGMDCLKP_13 | 32152 | 30422 | ptsI | 0.0 | phosphoenolpyruvate-protein phosphotransferase | 88.04 | 100.00 | AAK34199 |
| MGMDCLKP_26 | 62257 | 60779 | IMPDH | 0.0 | inosine-5'-monophosphate dehydrogenase | 87.63 | 100.00 | ADE32434 |
| MGMDCLKP_34 | 95548 | 96849 | Eno | 0.0 | enolase | 86.21 | 99.77 | ABP90468 |
| MGMDCLKP_26 | 47519 | 45627 | gidA | 0.0 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme | 85.74 | 98.90 | ABP91129 |
| MGMDCLKP_3 | 11348 | 9639 | PGM | 0.0 | phosphoglucomutase | 84.06 | 99.65 | ACH87041 |
| MGMDCLKP_20 | 22397 | 23407 | pdh | 0.0 | pyruvate dehydrogenase | 82.79 | 99.70 | ABP91006 |
| MGMDCLKP_9 | 39682 | 38321 | mnmE | 0.0 | central tRNA-modifying GTPase | 82.24 | 99.56 | ABP90420 |
| MGMDCLKP_20 | 72715 | 70823 | PepO | 0.0 | endopeptidase | 80.03 | 100.00 | ABF32980 |
| MGMDCLKP_34 | 81113 | 82003 | bglB | 1.24e-179 | putative phospho--glucosidase | 88.89 | 99.66 | AAK33487 |
| MGMDCLKP_8 | 11841 | 10906 | SP_0676 | 2.03e-169 | transcription facot | 81.73 | 96.89 | AAK74821 |
| MGMDCLKP_3 | 8615 | 9472 | metF | 1.40e-166 | methionine biosynthesis enzymes | 86.36 | 99.31 | AAK74739 |
| MGMDCLKP_11 | 56904 | 56200 | covR | 3.05e-132 | responder protein | 85.53 | 100.00 | AAK71319 |
| MGMDCLKP_13 | 100464 | 99793 | rr01 | 2.29e-125 | response regulator | 83.93 | 99.56 | CAB54566 |
| MGMDCLKP_11 | 56904 | 56200 | walR | 1.28e-122 | DNA-binding response regulator | 82.13 | 100.00 | ANC99504 |
| MGMDCLKP_3 | 15302 | 15970 | CiaR | 4.18e-121 | two-component response regulator | 84.75 | 99.55 | AAK74935 |
| MGMDCLKP_31 | 66152 | 66838 | CovR | 6.19e-119 | serves to repress GAS virulence factor-encoding genes | 80.79 | 100.00 | ACE75886 |
| MGMDCLKP_3 | 15302 | 15973 | ciaR | 8.25e-119 | two component system response regulator | 82.59 | 99.12 | AIK75708 |
| MGMDCLKP_12 | 12350 | 12724 | SpxA2 | 7.97e-72 | transcriptional regulator | 91.20 | 94.70 | ERL21461 |
| MGMDCLKP_9 | 51147 | 51548 | SpxA1 | 1.32e-67 | transcriptional regulator | 80.60 | 100.00 | ERL19273 |
| MGMDCLKP_31 | 88536 | 88823 | spr0479 | 8.74e-49 | essential gene | 86.46 | 98.97 | AAK99283 |
| MGMDCLKP_32 | 125965 | 126219 | spr1327 | 1.56e-44 | essential gene | 94.12 | 100.00 | AAL00131 |
| MGMDCLKP_26 | 13871 | 14134 | spr0175 | 3.44e-42 | pathogenitcity related | 84.09 | 100.00 | AAK98979 |
| MGMDCLKP_26 | 14698 | 14964 | spr0177 | 7.52e-34 | essential gene | 84.27 | 88.12 | AAK98981 |
| MGMDCLKP_29 | 7824 | 8324 | RopE (M5005_Spy_1611) | 2.27e-76 | probable DNA-directed RNA polymerase subunit delta | 81.44 | 87.43 | AAK34603 |
| MGMDCLKP_17 | 57612 | 59909 | PFL (B9H01_RS01125) | 0.0 | formate C-acetyltransferase | 82.94 | 98.08 | MYN69560 |
| MGMDCLKP_20 | 58261 | 57242 | ilvC (SPD_0406) | 0.0 | ketol-acid reductoisomerase (NADP(+)) | 96.47 | 100.00 | ABJ55451 |