Genome ID:GCA_019450065.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 28 | 33 | 43.28 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DGIOIDPF_8 | 9999 | 10868 | rfbA | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681286 |
| DGIOIDPF_8 | 9406 | 9999 | STER_RS06030 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011226149 |
| DGIOIDPF_11 | 17007 | 18752 | STER_RS07045 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681434 |
| DGIOIDPF_11 | 18754 | 20454 | STER_RS07050 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_041827753 |
| DGIOIDPF_11 | 20472 | 21674 | STER_RS07055 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681436 |
| DGIOIDPF_11 | 21674 | 22480 | STER_RS07060 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681437 |
| DGIOIDPF_11 | 22480 | 23421 | STER_RS07065 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681438 |
| DGIOIDPF_11 | 23418 | 24566 | STER_RS07070 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681439 |
| DGIOIDPF_11 | 24685 | 25461 | STER_RS07075 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681440 |
| DGIOIDPF_11 | 25807 | 26523 | STER_RS07085 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681442 |
| DGIOIDPF_11 | 26524 | 27492 | STER_RS07090 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681443 |
| DGIOIDPF_11 | 28484 | 29743 | STER_RS07100 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681445 |
| DGIOIDPF_11 | 27510 | 28487 | STER_RS07095 | 0.0 | Capsule | Immune modulation | 99.90 | 100.00 | WP_011681444 |
| DGIOIDPF_8 | 9406 | 9999 | STR_RS05880 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011226149 |
| DGIOIDPF_11 | 18754 | 20454 | STR_RS06890 | 0.0 | Capsule | Immune modulation | 99.71 | 100.00 | WP_041827077 |
| DGIOIDPF_8 | 9406 | 9999 | STU_RS15260 | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | WP_011226149 |
| DGIOIDPF_5 | 65617 | 67275 | fbp54 | 0.0 | FBPs | Adherence | 99.58 | 100.00 | WP_011227179 |
| DGIOIDPF_1 | 20790 | 21629 | cbpD | 0.0 | Autolysin | Exoenzyme | 99.52 | 100.00 | WP_011226733 |
| DGIOIDPF_11 | 21674 | 22480 | STR_RS06900 | 0.0 | Capsule | Immune modulation | 99.50 | 100.00 | WP_011227429 |
| DGIOIDPF_27 | 1117 | 2260 | cshA | 0.0 | Cell surface hydrophobicity proteins | Adherence | 99.48 | 100.00 | - |
| DGIOIDPF_11 | 22480 | 23421 | STR_RS06905 | 0.0 | Capsule | Immune modulation | 99.47 | 100.00 | WP_011227430 |
| DGIOIDPF_11 | 20472 | 21674 | STR_RS06895 | 0.0 | Capsule | Immune modulation | 99.42 | 100.00 | WP_011227428 |
| DGIOIDPF_11 | 23418 | 24566 | STR_RS06910 | 0.0 | Capsule | Immune modulation | 99.22 | 100.00 | WP_011227431 |
| DGIOIDPF_7 | 17837 | 18568 | STER_RS05315 | 0.0 | Capsule | Immune modulation | 98.50 | 100.00 | WP_011681176 |
| DGIOIDPF_7 | 17837 | 18568 | STU_RS14645 | 0.0 | Capsule | Immune modulation | 98.50 | 100.00 | WP_011226048 |
| DGIOIDPF_7 | 17837 | 18568 | STR_RS05260 | 0.0 | Capsule | Immune modulation | 98.36 | 100.00 | WP_011227248 |
| DGIOIDPF_11 | 17007 | 18752 | STR_RS06885 | 0.0 | Capsule | Immune modulation | 98.22 | 100.00 | WP_011227426 |
| DGIOIDPF_7 | 18569 | 20029 | STER_RS05320 | 0.0 | Capsule | Immune modulation | 97.81 | 100.00 | WP_011681177 |
| DGIOIDPF_8 | 44770 | 45531 | srtA | 0.0 | Sortase A | Exoenzyme | 97.77 | 100.00 | - |
| DGIOIDPF_7 | 18569 | 20029 | STU_RS14650 | 0.0 | Capsule | Immune modulation | 97.06 | 100.21 | WP_011226049 |
| DGIOIDPF_7 | 16386 | 17126 | STU_RS14635 | 0.0 | Capsule | Immune modulation | 97.03 | 100.00 | WP_011226046 |
| DGIOIDPF_7 | 16386 | 17126 | STER_RS05305 | 0.0 | Capsule | Immune modulation | 96.90 | 100.00 | WP_011681174 |
| DGIOIDPF_11 | 29862 | 30713 | rfbD | 0.0 | Capsule | Immune modulation | 96.83 | 100.00 | WP_014621820 |
| DGIOIDPF_7 | 16391 | 17126 | STR_RS05250 | 0.0 | Capsule | Immune modulation | 96.47 | 98.13 | WP_011227246 |
| DGIOIDPF_7 | 18569 | 20029 | STR_RS05265 | 0.0 | Capsule | Immune modulation | 96.23 | 100.21 | WP_041827043 |
| DGIOIDPF_7 | 14965 | 16330 | STER_RS05300 | 0.0 | Capsule | Immune modulation | 95.39 | 99.85 | WP_011681173 |
| DGIOIDPF_7 | 17136 | 17828 | STR_RS05255 | 0.0 | Capsule | Immune modulation | 95.25 | 99.86 | WP_011227247 |
| DGIOIDPF_7 | 17136 | 17828 | STU_RS14640 | 0.0 | Capsule | Immune modulation | 95.25 | 99.86 | WP_011226047 |
| DGIOIDPF_7 | 14963 | 16330 | STU_RS14630 | 0.0 | Capsule | Immune modulation | 94.37 | 100.00 | WP_011226045 |
| DGIOIDPF_7 | 17136 | 17828 | STER_RS05310 | 0.0 | Capsule | Immune modulation | 89.61 | 100.00 | WP_011681175 |
| DGIOIDPF_27 | 100778 | 102081 | eno | 0.0 | Streptococcal enolase | Exoenzyme | 88.10 | 99.46 | WP_000022832 |
| DGIOIDPF_15 | 123 | 1133 | plr/gapA | 0.0 | Streptococcal plasmin receptor/GAPDH | Adherence | 86.54 | 99.41 | WP_002986042 |
| DGIOIDPF_11 | 21674 | 22480 | SGO_RS05020 | 0.0 | Capsule | Immune modulation | 82.90 | 100.00 | WP_012000440 |
| DGIOIDPF_24 | 6383 | 7666 | tig/ropA | 0.0 | Trigger factor | Stress survival | 80.73 | 99.77 | WP_000107753 |
| DGIOIDPF_8 | 7931 | 8977 | rfbB | 0.0 | Capsule | Immune modulation | 80.61 | 100.00 | WP_009659423 |
| DGIOIDPF_7 | 5432 | 6015 | SPD_RS01775 | 1.30e-147 | Capsule | Immune modulation | 83.11 | 96.04 | WP_001819836 |
| DGIOIDPF_11 | 20937 | 21674 | SGO_RS05025 | 0.0 | Capsule | Immune modulation | 84.96 | 60.29 | WP_012000441 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DGIOIDPF_27 | 205159 | 206232 | MntE | 0.0 | manganese homeostasis | 94.41 | 99.72 | ABF32167 |
| DGIOIDPF_8 | 48218 | 49201 | ldh(Sp_1220) | 0.0 | L-lactate dehydrogenase | 94.21 | 100.00 | AAK75326 |
| DGIOIDPF_27 | 18539 | 19507 | spr0084 | 0.0 | pathogenitcity related | 93.19 | 98.48 | AAK98888 |
| DGIOIDPF_13 | 57612 | 59915 | pfl2(Sp_0459) | 0.0 | formate acetyltransferase | 92.97 | 99.22 | AAK74619 |
| DGIOIDPF_9 | 38907 | 40388 | SPD_0310 | 0.0 | UPF0371 protein SPD_0310 | 92.71 | 100.00 | ABJ54480 |
| DGIOIDPF_28 | 6177 | 8423 | metE | 0.0 | methionine biosynthesis enzymes | 91.99 | 100.00 | AAK74738 |
| DGIOIDPF_12 | 11076 | 12074 | recA | 0.0 | DNA recombination and repair | 91.29 | 85.82 | AAL00560 |
| DGIOIDPF_1 | 4306 | 5277 | prsA2 | 0.0 | ribose-phosphate pyrophosphokinase | 90.12 | 100.00 | ABF36968 |
| DGIOIDPF_11 | 79639 | 78488 | potA | 0.0 | ABC transporter ATP-binding protein-spermidine/putrescine transport | 89.32 | 99.74 | AAL00050 |
| DGIOIDPF_11 | 43750 | 41762 | uvrB | 0.0 | excinuclease ABC, B subunit | 88.84 | 100.00 | AE014259_2 |
| DGIOIDPF_8 | 32019 | 30289 | ptsI | 0.0 | phosphoenolpyruvate-protein phosphotransferase | 88.04 | 100.00 | AAK34199 |
| DGIOIDPF_7 | 157375 | 158853 | IMPDH | 0.0 | inosine-5'-monophosphate dehydrogenase | 87.63 | 100.00 | ADE32434 |
| DGIOIDPF_27 | 100778 | 102079 | Eno | 0.0 | enolase | 86.21 | 99.77 | ABP90468 |
| DGIOIDPF_7 | 172113 | 174005 | gidA | 0.0 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme | 85.74 | 98.90 | ABP91129 |
| DGIOIDPF_28 | 11348 | 9639 | PGM | 0.0 | phosphoglucomutase | 84.06 | 99.65 | ACH87041 |
| DGIOIDPF_16 | 22397 | 23407 | pdh | 0.0 | pyruvate dehydrogenase | 82.79 | 99.70 | ABP91006 |
| DGIOIDPF_5 | 92252 | 90891 | mnmE | 0.0 | central tRNA-modifying GTPase | 82.24 | 99.56 | ABP90420 |
| DGIOIDPF_16 | 72715 | 70823 | PepO | 0.0 | endopeptidase | 80.03 | 100.00 | ABF32980 |
| DGIOIDPF_27 | 86343 | 87233 | bglB | 1.57e-179 | putative phospho--glucosidase | 88.89 | 99.66 | AAK33487 |
| DGIOIDPF_5 | 11841 | 10906 | SP_0676 | 4.67e-169 | transcription facot | 81.73 | 96.89 | AAK74821 |
| DGIOIDPF_28 | 8615 | 9472 | metF | 1.40e-166 | methionine biosynthesis enzymes | 86.36 | 99.31 | AAK74739 |
| DGIOIDPF_7 | 56829 | 56125 | covR | 5.18e-132 | responder protein | 85.53 | 100.00 | AAK71319 |
| DGIOIDPF_9 | 10803 | 10132 | rr01 | 8.38e-126 | response regulator | 83.93 | 99.56 | CAB54566 |
| DGIOIDPF_7 | 56829 | 56125 | walR | 2.18e-122 | DNA-binding response regulator | 82.13 | 100.00 | ANC99504 |
| DGIOIDPF_28 | 15302 | 15970 | CiaR | 4.18e-121 | two-component response regulator | 84.75 | 99.55 | AAK74935 |
| DGIOIDPF_25 | 73607 | 74293 | CovR | 6.59e-119 | serves to repress GAS virulence factor-encoding genes | 80.79 | 100.00 | ACE75886 |
| DGIOIDPF_28 | 15302 | 15973 | ciaR | 8.25e-119 | two component system response regulator | 82.59 | 99.12 | AIK75708 |
| DGIOIDPF_12 | 12350 | 12724 | SpxA2 | 7.97e-72 | transcriptional regulator | 91.20 | 94.70 | ERL21461 |
| DGIOIDPF_5 | 103717 | 104118 | SpxA1 | 2.39e-67 | transcriptional regulator | 80.60 | 100.00 | ERL19273 |
| DGIOIDPF_25 | 95991 | 96278 | spr0479 | 9.30e-49 | essential gene | 86.46 | 98.97 | AAK99283 |
| DGIOIDPF_26 | 126308 | 126562 | spr1327 | 1.56e-44 | essential gene | 94.12 | 100.00 | AAL00131 |
| DGIOIDPF_7 | 205761 | 205498 | spr0175 | 8.46e-42 | pathogenitcity related | 84.09 | 100.00 | AAK98979 |
| DGIOIDPF_7 | 204934 | 204668 | spr0177 | 1.85e-33 | essential gene | 84.27 | 88.12 | AAK98981 |
| DGIOIDPF_24 | 7824 | 8324 | RopE (M5005_Spy_1611) | 2.27e-76 | probable DNA-directed RNA polymerase subunit delta | 81.44 | 87.43 | AAK34603 |
| DGIOIDPF_13 | 57612 | 59909 | PFL (B9H01_RS01125) | 0.0 | formate C-acetyltransferase | 82.94 | 98.08 | MYN69560 |
| DGIOIDPF_16 | 58261 | 57242 | ilvC (SPD_0406) | 0.0 | ketol-acid reductoisomerase (NADP(+)) | 96.47 | 100.00 | ABJ55451 |