Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 6 | 6.40 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KMIKKMPP_3 | 173263 | 174312 | clbA | ARO:3002814 | clbA | 97.42 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KMIKKMPP_3 | 173263 | 174298 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 87.64 | 98.67 | KR610408 |
| KMIKKMPP_1 | 369789 | 371165 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 86.64 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KMIKKMPP_3 | 173263 | 174306 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 97.70 | 99.71 | WP_012116915.1 |
| KMIKKMPP_1 | 369789 | 371159 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.65 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KMIKKMPP_2 | 235545 | 236726 | capB | 0.0 | Capsule | Immune modulation | 82.29 | 99.66 | NP_391471 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KMIKKMPP_9 | 27984 | 26848 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| KMIKKMPP_13 | 12455 | 11586 | pdxS | 8.75e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| KMIKKMPP_1 | 1330795 | 1330019 | CodY | 2.48e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| KMIKKMPP_1 | 1848009 | 1847617 | spxA1 | 4.54e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| KMIKKMPP_3 | 143265 | 143462 | CspA | 1.30e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| KMIKKMPP_3 | 143265 | 143459 | CspR | 1.70e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| KMIKKMPP_5 | 30078 | 30950 | lipA (SAUSA300_0829) | 5.38e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |