Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 6 | 7.48 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJGBGJFA_17 | 23134 | 24180 | clbA | ARO:3002814 | clbA | 92.77 | 99.71 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LJGBGJFA_17 | 23134 | 24177 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.90 | 99.33 | KR610408 |
| LJGBGJFA_6 | 137229 | 138605 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 87.15 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LJGBGJFA_17 | 23134 | 24177 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.24 | 99.71 | WP_012116915.1 |
| LJGBGJFA_6 | 137229 | 138599 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
| LJGBGJFA_17 | 20865 | 21383 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 82.66 | 100.00 | WP_003242546.1 |
| LJGBGJFA_1 | 5237 | 7834 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.06 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| LJGBGJFA_34 | 3492 | 4673 | capB | 0.0 | Capsule | Immune modulation | 81.87 | 99.66 | NP_391471 |
| LJGBGJFA_34 | 4688 | 5137 | capC | 1.16e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LJGBGJFA_20 | 27509 | 26373 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| LJGBGJFA_40 | 4474 | 3605 | pdxS | 3.20e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| LJGBGJFA_1 | 209039 | 208263 | CodY | 5.01e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| LJGBGJFA_56 | 41597 | 41205 | spxA1 | 3.93e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| LJGBGJFA_17 | 6641 | 6838 | CspA | 1.07e-32 | cold shock protein | 92.42 | 100.00 | CAA62903 |
| LJGBGJFA_67 | 104840 | 105034 | CspD | 3.40e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| LJGBGJFA_67 | 104840 | 105037 | CspB | 7.05e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| LJGBGJFA_17 | 6641 | 6835 | CspR | 5.29e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |