Genome ID:GCA_019704375.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 4 | 16.88 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GLIPNALI_1 | 2704281 | 2705135 | aadK | ARO:3002627 | aadK | 100.00 | 100.00 | AL009126.1 |
| GLIPNALI_1 | 2685572 | 2686774 | blt | ARO:3003006 | blt | 100.00 | 100.00 | L32599.1 |
| GLIPNALI_1 | 2463254 | 2464423 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| GLIPNALI_1 | 1345425 | 1345739 | ykkD | ARO:3003064 | ykkD | 99.05 | 99.05 | AL009126.1 |
| GLIPNALI_1 | 1345087 | 1345425 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| GLIPNALI_1 | 885281 | 887851 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 100.00 | 100.00 | AL009126.3 |
| GLIPNALI_1 | 573243 | 574886 | vmlR | ARO:3004476 | vmlR | 100.00 | 100.00 | NC_000964.3 |
| GLIPNALI_1 | 328176 | 328769 | tmrB | ARO:3003059 | tmrB | 100.00 | 100.00 | AL009126.3 |
| GLIPNALI_1 | 277673 | 279106 | lmrB | ARO:3002813 | lmrB | 100.00 | 100.00 | JYFL01000006.1 |
| GLIPNALI_1 | 264858 | 265778 | mphK | ARO:3004541 | mphK | 100.00 | 100.00 | CP010314.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GLIPNALI_1 | 2704281 | 2705135 | aadK | Streptomycin | 100.00 | 100.00 | M26879 |
| GLIPNALI_1 | 264858 | 265778 | mph(K) | Spiramycin, Telithromycin | 100.00 | 100.00 | NC_000964 |
| GLIPNALI_1 | 4166678 | 4168054 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 100.00 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GLIPNALI_1 | 2704284 | 2705135 | aadK | aminoglycoside 6-adenylyltransferase AadK | EXACTX | 100.00 | 100.00 | WP_003229862.1 |
| GLIPNALI_1 | 264858 | 265775 | mphK | macrolide 2'-phosphotransferase MphK | EXACTX | 100.00 | 100.00 | WP_003246254.1 |
| GLIPNALI_1 | 4164160 | 4164678 | satA | streptothricin N-acetyltransferase SatA | EXACTX | 100.00 | 100.00 | WP_003242546.1 |
| GLIPNALI_1 | 4166681 | 4168054 | tet(L) | tetracycline efflux MFS transporter Tet(L) | EXACTX | 100.00 | 100.00 | WP_003242953.1 |
| GLIPNALI_1 | 573246 | 574886 | vmlR | ABC-F type ribosomal protection protein VmlR | EXACTX | 100.00 | 100.00 | WP_003234144.1 |
| GLIPNALI_1 | 2019937 | 2022531 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.15 | 99.88 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GLIPNALI_1 | 1973279 | 1975042 | dep/capD | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | NP_389723 |
| GLIPNALI_1 | 3260155 | 3260940 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391080 |
| GLIPNALI_1 | 3256319 | 3257257 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391077 |
| GLIPNALI_1 | 3258933 | 3260129 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391079 |
| GLIPNALI_1 | 3257285 | 3258904 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391078 |
| GLIPNALI_1 | 3249163 | 3256299 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391076 |
| GLIPNALI_1 | 2263902 | 2264543 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 100.00 | 100.00 | NP_390062 |
| GLIPNALI_1 | 3667627 | 3668808 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| GLIPNALI_1 | 3666002 | 3667144 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| GLIPNALI_1 | 3667163 | 3667612 | capC | 0.0 | Capsule | Immune modulation | 98.89 | 100.00 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GLIPNALI_1 | 132473 | 133609 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| GLIPNALI_1 | 18665 | 19534 | pdxS | 3.12e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| GLIPNALI_1 | 1658723 | 1659499 | CodY | 3.40e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| GLIPNALI_1 | 3514868 | 3515437 | ClpP | 2.52e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |