Genome ID：GCA_019704435.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
13	10	4	16.88

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
LIGOEHHK_1	2855744	2857120	tet(L)	ARO:3000179	tet(L)	99.78	100.00	M11036.1
LIGOEHHK_1	2701514	2702368	aadK	ARO:3002627	aadK	100.00	100.00	AL009126.1
LIGOEHHK_1	2682805	2684007	blt	ARO:3003006	blt	100.00	100.00	L32599.1
LIGOEHHK_1	2460488	2461657	bmr	ARO:3003007	bmr	99.74	100.00	M33768.1
LIGOEHHK_1	1342668	1342982	ykkD	ARO:3003064	ykkD	99.05	99.05	AL009126.1
LIGOEHHK_1	1342330	1342668	ykkC	ARO:3003063	ykkC	100.00	100.00	AL009126.1
LIGOEHHK_1	882618	885188	Bacillus subtilis mprF	ARO:3003324	Bsub_mprF	100.00	100.00	AL009126.3
LIGOEHHK_1	570580	572223	vmlR	ARO:3004476	vmlR	100.00	100.00	NC_000964.3
LIGOEHHK_1	325510	326103	tmrB	ARO:3003059	tmrB	100.00	100.00	AL009126.3
LIGOEHHK_1	277654	279087	lmrB	ARO:3002813	lmrB	100.00	100.00	JYFL01000006.1
LIGOEHHK_1	264839	265759	mphK	ARO:3004541	mphK	100.00	100.00	CP010314.1

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
LIGOEHHK_1	2701514	2702368	aadK	Streptomycin	100.00	100.00	M26879
LIGOEHHK_1	264839	265759	mph(K)	Spiramycin, Telithromycin	100.00	100.00	NC_000964
LIGOEHHK_1	2855744	2857120	tet(L)	Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline	100.00	100.00	M29725

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
LIGOEHHK_1	2701517	2702368	aadK	aminoglycoside 6-adenylyltransferase AadK	EXACTX	100.00	100.00	WP_003229862.1
LIGOEHHK_1	264839	265756	mphK	macrolide 2'-phosphotransferase MphK	EXACTX	100.00	100.00	WP_003246254.1
LIGOEHHK_1	2855747	2857120	tet(L)	tetracycline efflux MFS transporter Tet(L)	EXACTX	100.00	100.00	WP_001574277.1
LIGOEHHK_1	570583	572223	vmlR	ABC-F type ribosomal protection protein VmlR	EXACTX	100.00	100.00	WP_003234144.1
LIGOEHHK_1	4158293	4158811	satA	streptothricin N-acetyltransferase SatA	BLASTX	90.75	100.00	WP_003242546.1
LIGOEHHK_1	2017171	2019765	rphC	rifamycin-inactivating phosphotransferase RphC	BLASTX	81.15	99.88	WP_087347987.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
LIGOEHHK_1	1970513	1972276	dep/capD	0.0	Capsule	Immune modulation	100.00	100.00	NP_389723
LIGOEHHK_1	2261136	2261777	hlyIII	0.0	Hemolysin III	Exotoxin	100.00	100.00	NP_390062
LIGOEHHK_1	3666875	3668056	capB	0.0	Capsule	Immune modulation	99.66	100.00	NP_391471
LIGOEHHK_1	3258981	3259766	dhbA	0.0	Bacillibactin	Nutritional/Metabolic factor	99.49	100.00	NP_391080
LIGOEHHK_1	3665250	3666392	capA	0.0	Capsule	Immune modulation	99.30	100.00	NP_391469
LIGOEHHK_1	3247989	3255125	dhbF	0.0	Bacillibactin	Nutritional/Metabolic factor	99.30	100.00	NP_391076
LIGOEHHK_1	3255145	3256083	dhbB	0.0	Bacillibactin	Nutritional/Metabolic factor	99.04	100.00	NP_391077
LIGOEHHK_1	3257759	3258955	dhbC	0.0	Bacillibactin	Nutritional/Metabolic factor	99.00	100.00	NP_391079
LIGOEHHK_1	3666411	3666860	capC	0.0	Capsule	Immune modulation	98.89	100.00	NP_391470
LIGOEHHK_1	3256111	3257730	dhbE	0.0	Bacillibactin	Nutritional/Metabolic factor	96.73	100.00	NP_391078

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
LIGOEHHK_1	132474	133610	tufA	0.0	elongation factor Tu	84.96	95.69	AHM69299
LIGOEHHK_1	18665	19534	pdxS	3.11e-149	encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS	83.79	98.31	ACE61268
LIGOEHHK_1	1655966	1656742	CodY	3.40e-124	nutrient-responsive regulator	81.08	100.00	ACJ80679
LIGOEHHK_1	3513680	3514249	ClpP	2.52e-98	part of proteolytic complex	81.05	97.44	BAB94595