Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 7 | 7.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OHOOHJJF_24 | 18033 | 19082 | clbA | ARO:3002814 | clbA | 99.43 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OHOOHJJF_24 | 18033 | 19068 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.80 | 98.67 | KR610408 |
| OHOOHJJF_193 | 3749 | 5125 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 87.00 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OHOOHJJF_24 | 18033 | 19079 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.43 | 100.00 | WP_012116915.1 |
| OHOOHJJF_193 | 3755 | 5125 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.21 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OHOOHJJF_145 | 27686 | 28867 | capB | 0.0 | Capsule | Immune modulation | 81.96 | 99.66 | NP_391471 |
| OHOOHJJF_145 | 27222 | 27671 | capC | 9.61e-114 | Capsule | Immune modulation | 83.37 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OHOOHJJF_90 | 31901 | 33037 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| OHOOHJJF_225 | 4394 | 5263 | pdxS | 1.36e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| OHOOHJJF_35 | 24614 | 25390 | CodY | 8.63e-126 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| OHOOHJJF_185 | 7940 | 8332 | spxA1 | 9.57e-71 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| OHOOHJJF_78 | 1419 | 1616 | CspA | 7.75e-34 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| OHOOHJJF_232 | 1058 | 1252 | CspD | 3.83e-29 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| OHOOHJJF_232 | 1058 | 1255 | CspB | 7.95e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| OHOOHJJF_78 | 1419 | 1613 | CspR | 1.24e-28 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| OHOOHJJF_212 | 11885 | 11013 | lipA (SAUSA300_0829) | 7.06e-164 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |