Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 2 | 2.83 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDPOLOKK_36 | 4036 | 4530 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
| HDPOLOKK_44 | 168 | 812 | vatE | ARO:3002844 | vatE | 97.20 | 100.00 | AF242872.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HDPOLOKK_36 | 4036 | 4530 | lnu(C) | Lincomycin | 99.19 | 100.00 | AY928180 |
| HDPOLOKK_44 | 168 | 812 | vat(E) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 96.43 | 100.00 | AJ488494 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HDPOLOKK_44 | 171 | 812 | vat(E) | streptogramin A O-acetyltransferase Vat(E) | BLASTX | 99.53 | 100.00 | WP_063856929.1 |
| HDPOLOKK_36 | 4036 | 4527 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HDPOLOKK_15 | 35831 | 36538 | WalR | 1.76e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| HDPOLOKK_4 | 29714 | 29911 | CspR | 1.62e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| HDPOLOKK_4 | 29714 | 29908 | CspA | 7.92e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |