Genome ID:GCA_020076145.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 35 | 33 | 48.10 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| IDKLJMEJ_53 | 9521 | 10390 | rfbA | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681286 |
| IDKLJMEJ_47 | 231 | 1646 | STER_RS05250 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681165 |
| IDKLJMEJ_50 | 86313 | 87293 | STER_RS05260 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681166 |
| IDKLJMEJ_50 | 85136 | 86320 | STER_RS05265 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681167 |
| IDKLJMEJ_50 | 84067 | 85119 | STER_RS05270 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681168 |
| IDKLJMEJ_50 | 83144 | 84052 | STER_RS05275 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681169 |
| IDKLJMEJ_50 | 82062 | 83123 | STER_RS05280 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_202964935 |
| IDKLJMEJ_50 | 81534 | 82025 | STER_RS05285 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681171 |
| IDKLJMEJ_50 | 81046 | 81522 | STER_RS05290 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681172 |
| IDKLJMEJ_50 | 78126 | 78866 | STER_RS05305 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681174 |
| IDKLJMEJ_50 | 77424 | 78116 | STER_RS05310 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681175 |
| IDKLJMEJ_50 | 76684 | 77415 | STER_RS05315 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681176 |
| IDKLJMEJ_50 | 75223 | 76683 | STER_RS05320 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681177 |
| IDKLJMEJ_53 | 8928 | 9521 | STER_RS06030 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011226149 |
| IDKLJMEJ_33 | 43918 | 45663 | STER_RS07045 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681434 |
| IDKLJMEJ_33 | 42216 | 43916 | STER_RS07050 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_041827753 |
| IDKLJMEJ_33 | 40996 | 42198 | STER_RS07055 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681436 |
| IDKLJMEJ_33 | 40190 | 40996 | STER_RS07060 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681437 |
| IDKLJMEJ_33 | 39249 | 40190 | STER_RS07065 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681438 |
| IDKLJMEJ_33 | 38104 | 39252 | STER_RS07070 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681439 |
| IDKLJMEJ_33 | 37209 | 37985 | STER_RS07075 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681440 |
| IDKLJMEJ_33 | 36147 | 36863 | STER_RS07085 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681442 |
| IDKLJMEJ_33 | 35178 | 36146 | STER_RS07090 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681443 |
| IDKLJMEJ_33 | 34183 | 35160 | STER_RS07095 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681444 |
| IDKLJMEJ_33 | 32927 | 34186 | STER_RS07100 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011681445 |
| IDKLJMEJ_50 | 78923 | 80290 | STER_RS05300 | 0.0 | Capsule | Immune modulation | 99.85 | 100.00 | WP_011681173 |
| IDKLJMEJ_53 | 8928 | 9521 | STR_RS05880 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011226149 |
| IDKLJMEJ_33 | 42216 | 43916 | STR_RS06890 | 0.0 | Capsule | Immune modulation | 99.71 | 100.00 | WP_041827077 |
| IDKLJMEJ_53 | 8928 | 9521 | STU_RS15260 | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | WP_011226149 |
| IDKLJMEJ_20 | 2393 | 4051 | fbp54 | 0.0 | FBPs | Adherence | 99.64 | 100.00 | WP_011227179 |
| IDKLJMEJ_33 | 40190 | 40996 | STR_RS06900 | 0.0 | Capsule | Immune modulation | 99.50 | 100.00 | WP_011227429 |
| IDKLJMEJ_33 | 39249 | 40190 | STR_RS06905 | 0.0 | Capsule | Immune modulation | 99.47 | 100.00 | WP_011227430 |
| IDKLJMEJ_33 | 40996 | 42198 | STR_RS06895 | 0.0 | Capsule | Immune modulation | 99.42 | 100.00 | WP_011227428 |
| IDKLJMEJ_33 | 38104 | 39252 | STR_RS06910 | 0.0 | Capsule | Immune modulation | 99.22 | 100.00 | WP_011227431 |
| IDKLJMEJ_8 | 34181 | 35149 | cbpD | 0.0 | Autolysin | Exoenzyme | 98.86 | 100.00 | WP_082302295 |
| IDKLJMEJ_50 | 1301 | 2091 | cshA | 0.0 | Cell surface hydrophobicity proteins | Adherence | 98.74 | 100.00 | - |
| IDKLJMEJ_50 | 78126 | 78861 | STR_RS05250 | 0.0 | Capsule | Immune modulation | 98.50 | 98.13 | WP_011227246 |
| IDKLJMEJ_50 | 78126 | 78866 | STU_RS14635 | 0.0 | Capsule | Immune modulation | 98.25 | 100.00 | WP_011226046 |
| IDKLJMEJ_50 | 76684 | 77415 | STR_RS05260 | 0.0 | Capsule | Immune modulation | 98.22 | 100.00 | WP_011227248 |
| IDKLJMEJ_33 | 43918 | 45663 | STR_RS06885 | 0.0 | Capsule | Immune modulation | 98.22 | 100.00 | WP_011227426 |
| IDKLJMEJ_50 | 76684 | 77415 | STU_RS14645 | 0.0 | Capsule | Immune modulation | 98.09 | 100.00 | WP_011226048 |
| IDKLJMEJ_53 | 44290 | 45051 | srtA | 0.0 | Sortase A | Exoenzyme | 97.64 | 100.00 | - |
| IDKLJMEJ_50 | 75223 | 76683 | STU_RS14650 | 0.0 | Capsule | Immune modulation | 97.47 | 100.21 | WP_011226049 |
| IDKLJMEJ_50 | 75223 | 76683 | STR_RS05265 | 0.0 | Capsule | Immune modulation | 96.92 | 100.21 | WP_041827043 |
| IDKLJMEJ_33 | 31957 | 32808 | rfbD | 0.0 | Capsule | Immune modulation | 96.83 | 100.00 | WP_014621820 |
| IDKLJMEJ_50 | 78923 | 80286 | STU_RS14630 | 0.0 | Capsule | Immune modulation | 94.94 | 99.71 | WP_011226045 |
| IDKLJMEJ_50 | 77424 | 78116 | STU_RS14640 | 0.0 | Capsule | Immune modulation | 89.90 | 100.00 | WP_011226047 |
| IDKLJMEJ_50 | 77424 | 78116 | STR_RS05255 | 0.0 | Capsule | Immune modulation | 89.61 | 100.00 | WP_011227247 |
| IDKLJMEJ_11 | 75060 | 76363 | eno | 0.0 | Streptococcal enolase | Exoenzyme | 88.10 | 99.46 | WP_000022832 |
| IDKLJMEJ_25 | 14294 | 15304 | plr/gapA | 0.0 | Streptococcal plasmin receptor/GAPDH | Adherence | 86.54 | 99.41 | WP_002986042 |
| IDKLJMEJ_33 | 40190 | 40996 | SGO_RS05020 | 0.0 | Capsule | Immune modulation | 82.90 | 100.00 | WP_012000440 |
| IDKLJMEJ_64 | 59407 | 60690 | tig/ropA | 0.0 | Trigger factor | Stress survival | 80.73 | 99.77 | WP_000107753 |
| IDKLJMEJ_53 | 7453 | 8499 | rfbB | 0.0 | Capsule | Immune modulation | 80.61 | 100.00 | WP_009659423 |
| IDKLJMEJ_33 | 40996 | 41733 | SGO_RS05025 | 0.0 | Capsule | Immune modulation | 84.96 | 60.29 | WP_012000441 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IDKLJMEJ_53 | 47738 | 48721 | ldh(Sp_1220) | 0.0 | L-lactate dehydrogenase | 94.82 | 100.00 | AAK75326 |
| IDKLJMEJ_10 | 27677 | 28750 | MntE | 0.0 | manganese homeostasis | 94.41 | 99.72 | ABF32167 |
| IDKLJMEJ_22 | 57528 | 59831 | pfl2(Sp_0459) | 0.0 | formate acetyltransferase | 92.97 | 99.22 | AAK74619 |
| IDKLJMEJ_5 | 18760 | 19728 | spr0084 | 0.0 | pathogenitcity related | 92.88 | 98.48 | AAK98888 |
| IDKLJMEJ_60 | 53024 | 54505 | SPD_0310 | 0.0 | UPF0371 protein SPD_0310 | 92.51 | 100.00 | ABJ54480 |
| IDKLJMEJ_41 | 80996 | 83242 | metE | 0.0 | methionine biosynthesis enzymes | 91.99 | 100.00 | AAK74738 |
| IDKLJMEJ_9 | 40292 | 41290 | recA | 0.0 | DNA recombination and repair | 91.29 | 85.82 | AAL00560 |
| IDKLJMEJ_9 | 4177 | 5148 | prsA2 | 0.0 | ribose-phosphate pyrophosphokinase | 90.12 | 100.00 | ABF36968 |
| IDKLJMEJ_2 | 44939 | 46090 | potA | 0.0 | ABC transporter ATP-binding protein-spermidine/putrescine transport | 89.32 | 99.74 | AAL00050 |
| IDKLJMEJ_33 | 18918 | 20906 | uvrB | 0.0 | excinuclease ABC, B subunit | 89.14 | 100.00 | AE014259_2 |
| IDKLJMEJ_53 | 31539 | 29809 | ptsI | 0.0 | phosphoenolpyruvate-protein phosphotransferase | 87.87 | 100.00 | AAK34199 |
| IDKLJMEJ_3 | 13824 | 15302 | IMPDH | 0.0 | inosine-5'-monophosphate dehydrogenase | 87.63 | 100.00 | ADE32434 |
| IDKLJMEJ_11 | 76363 | 75062 | Eno | 0.0 | enolase | 86.21 | 99.77 | ABP90468 |
| IDKLJMEJ_3 | 28559 | 30451 | gidA | 0.0 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme | 85.74 | 98.90 | ABP91129 |
| IDKLJMEJ_41 | 86167 | 84458 | PGM | 0.0 | phosphoglucomutase | 84.06 | 99.65 | ACH87041 |
| IDKLJMEJ_1 | 40149 | 39139 | pdh | 0.0 | pyruvate dehydrogenase | 83.09 | 99.70 | ABP91006 |
| IDKLJMEJ_41 | 47712 | 49073 | mnmE | 0.0 | central tRNA-modifying GTPase | 82.24 | 99.56 | ABP90420 |
| IDKLJMEJ_18 | 10286 | 8394 | PepO | 0.0 | endopeptidase | 80.19 | 100.00 | ABF32980 |
| IDKLJMEJ_11 | 90799 | 89909 | bglB | 3.47e-179 | putative phospho--glucosidase | 88.55 | 99.66 | AAK33487 |
| IDKLJMEJ_33 | 58341 | 57403 | SP_0676 | 4.30e-169 | transcription facot | 81.47 | 97.20 | AAK74821 |
| IDKLJMEJ_41 | 83434 | 84291 | metF | 7.59e-166 | methionine biosynthesis enzymes | 86.36 | 99.31 | AAK74739 |
| IDKLJMEJ_50 | 38400 | 39104 | covR | 2.07e-132 | responder protein | 85.53 | 100.00 | AAK71319 |
| IDKLJMEJ_60 | 28417 | 27746 | rr01 | 1.06e-125 | response regulator | 83.93 | 99.56 | CAB54566 |
| IDKLJMEJ_50 | 38400 | 39104 | walR | 8.72e-123 | DNA-binding response regulator | 82.13 | 100.00 | ANC99504 |
| IDKLJMEJ_12 | 23741 | 24427 | CovR | 2.22e-119 | serves to repress GAS virulence factor-encoding genes | 80.79 | 100.00 | ACE75886 |
| IDKLJMEJ_41 | 90122 | 90790 | CiaR | 1.00e-118 | two-component response regulator | 84.31 | 99.55 | AAK74935 |
| IDKLJMEJ_41 | 90122 | 90793 | ciaR | 9.88e-117 | two component system response regulator | 82.14 | 99.12 | AIK75708 |
| IDKLJMEJ_9 | 41566 | 41940 | SpxA2 | 2.61e-71 | transcriptional regulator | 91.20 | 94.70 | ERL21461 |
| IDKLJMEJ_41 | 36349 | 35948 | SpxA1 | 1.87e-67 | transcriptional regulator | 80.60 | 100.00 | ERL19273 |
| IDKLJMEJ_14 | 25411 | 25124 | spr0479 | 2.93e-49 | essential gene | 86.46 | 98.97 | AAK99283 |
| IDKLJMEJ_13 | 33674 | 33928 | spr1327 | 4.16e-45 | essential gene | 94.12 | 100.00 | AAL00131 |
| IDKLJMEJ_21 | 15506 | 15769 | spr0175 | 6.41e-43 | pathogenitcity related | 84.09 | 100.00 | AAK98979 |
| IDKLJMEJ_21 | 16333 | 16599 | spr0177 | 1.40e-34 | essential gene | 84.27 | 88.12 | AAK98981 |
| IDKLJMEJ_64 | 59249 | 58749 | RopE (M5005_Spy_1611) | 1.66e-76 | probable DNA-directed RNA polymerase subunit delta | 81.44 | 87.43 | AAK34603 |
| IDKLJMEJ_22 | 57528 | 59825 | PFL (B9H01_RS01125) | 0.0 | formate C-acetyltransferase | 82.94 | 98.08 | MYN69560 |
| IDKLJMEJ_1 | 4288 | 5307 | ilvC (SPD_0406) | 0.0 | ketol-acid reductoisomerase (NADP(+)) | 96.47 | 100.00 | ABJ55451 |