Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 2 | 7 | 7.35 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PPOOMCEP_47 | 103004 | 104053 | clbA | ARO:3002814 | clbA | 99.71 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PPOOMCEP_47 | 103004 | 104039 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.80 | 98.67 | KR610408 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PPOOMCEP_47 | 103004 | 104050 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.71 | 100.00 | WP_012116915.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PPOOMCEP_45 | 255574 | 256755 | capB | 0.0 | Capsule | Immune modulation | 81.87 | 99.66 | NP_391471 |
| PPOOMCEP_45 | 256770 | 257219 | capC | 2.00e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PPOOMCEP_15 | 27952 | 26816 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| PPOOMCEP_20 | 12392 | 11523 | pdxS | 1.34e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| PPOOMCEP_49 | 199022 | 198246 | CodY | 2.99e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| PPOOMCEP_23 | 260780 | 261172 | spxA1 | 9.21e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| PPOOMCEP_47 | 89437 | 89634 | CspA | 8.93e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| PPOOMCEP_11 | 103908 | 103714 | CspD | 3.25e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| PPOOMCEP_11 | 103908 | 103711 | CspB | 6.74e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| PPOOMCEP_47 | 89437 | 89631 | CspR | 1.17e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| PPOOMCEP_18 | 1370 | 2242 | lipA (SAUSA300_0829) | 4.49e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |