Genome ID:GCA_020509345.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 11 | 10 | 9 | 17.38 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LOHCBLIL_238 | 29005 | 30438 | lmrB | ARO:3002813 | lmrB | 98.95 | 100.00 | JYFL01000006.1 |
| LOHCBLIL_3 | 20413 | 21582 | bmr | ARO:3003007 | bmr | 99.49 | 100.00 | M33768.1 |
| LOHCBLIL_222 | 9371 | 11941 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| LOHCBLIL_68 | 4082 | 4420 | ykkC | ARO:3003063 | ykkC | 99.11 | 100.00 | AL009126.1 |
| LOHCBLIL_68 | 3765 | 4082 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| LOHCBLIL_178 | 2230 | 3432 | blt | ARO:3003006 | blt | 100.00 | 100.00 | L32599.1 |
| LOHCBLIL_248 | 2144 | 2998 | aadK | ARO:3002627 | aadK | 97.54 | 100.00 | AL009126.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LOHCBLIL_211 | 24766 | 26142 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 98.77 | 100.00 | D12567 |
| LOHCBLIL_248 | 2146 | 2998 | aadK | Streptomycin | 98.48 | 99.77 | M26879 |
| LOHCBLIL_196 | 6483 | 7402 | mph(K) | Spiramycin, Telithromycin | 97.61 | 99.89 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LOHCBLIL_211 | 24769 | 26142 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_063856081.1 |
| LOHCBLIL_13 | 28297 | 29937 | vmlR | ABC-F type ribosomal protection protein VmlR | INTERNAL_STOP | 97.81 | 100.00 | WP_003234144.1 |
| LOHCBLIL_248 | 2147 | 2998 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.54 | 100.00 | WP_003229862.1 |
| LOHCBLIL_211 | 22273 | 22791 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| LOHCBLIL_29 | 31538 | 32476 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.68 | 100.00 | NP_391077 |
| LOHCBLIL_86 | 3307 | 4488 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| LOHCBLIL_86 | 1682 | 2824 | capA | 0.0 | Capsule | Immune modulation | 99.56 | 100.00 | NP_391469 |
| LOHCBLIL_86 | 2843 | 3292 | capC | 0.0 | Capsule | Immune modulation | 99.56 | 100.00 | NP_391470 |
| LOHCBLIL_154 | 9564 | 10205 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.53 | 100.00 | NP_390062 |
| LOHCBLIL_29 | 35363 | 36148 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391080 |
| LOHCBLIL_146 | 34130 | 35893 | dep/capD | 0.0 | Capsule | Immune modulation | 99.21 | 100.00 | NP_389723 |
| LOHCBLIL_29 | 24382 | 31518 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.78 | 100.00 | NP_391076 |
| LOHCBLIL_29 | 34141 | 35337 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.58 | 100.00 | NP_391079 |
| LOHCBLIL_29 | 32504 | 34123 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.78 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LOHCBLIL_174 | 27972 | 26836 | tufA | 0.0 | elongation factor Tu | 85.75 | 95.69 | AHM69299 |
| LOHCBLIL_229 | 11171 | 10302 | pdxS | 1.93e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.45 | 98.31 | ACE61268 |
| LOHCBLIL_204 | 37 | 813 | CodY | 3.95e-126 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| LOHCBLIL_17 | 54439 | 55008 | ClpP | 4.22e-100 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| LOHCBLIL_10 | 8019 | 8411 | spxA1 | 2.77e-71 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| LOHCBLIL_10 | 8019 | 8411 | spx | 1.65e-69 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| LOHCBLIL_186 | 14451 | 14209 | SpoVG | 3.35e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| LOHCBLIL_79 | 3138 | 3335 | CspA | 2.42e-32 | cold shock protein | 89.39 | 100.00 | CAA62903 |
| LOHCBLIL_154 | 21436 | 21630 | CspD | 1.95e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| LOHCBLIL_212 | 21275 | 21469 | CspB | 2.67e-28 | cold shock protein | 83.08 | 98.48 | CAD00094 |
| LOHCBLIL_79 | 3138 | 3332 | CspR | 7.59e-28 | cold shock protein | 80.00 | 98.48 | AAO82613 |