Genome ID：GCA_020562075.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
2	18	34	38.52

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
No hit found

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
LJOLFEFE_211	8860	10323	msr(D)	Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S	100.00	100.00	AF274302
LJOLFEFE_211	10443	11660	mef(A)	Erythromycin, Azithromycin	99.92	100.00	U83667

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
LJOLFEFE_211	10446	11660	mef(A)	macrolide efflux MFS transporter Mef(A)	EXACTX	100.00	100.00	WP_000417519.1
LJOLFEFE_211	8863	10323	msr(D)	ABC-F type ribosomal protection protein Msr(D)	EXACTX	100.00	100.00	WP_000420313.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
LJOLFEFE_1	183207	184667	STER_RS05320	0.0	Capsule	Immune modulation	97.06	100.00	WP_011681177
LJOLFEFE_1	183207	184667	STU_RS14650	0.0	Capsule	Immune modulation	96.72	100.21	WP_011226049
LJOLFEFE_255	65682	66397	STER_RS07085	0.0	Capsule	Immune modulation	96.37	99.86	WP_011681442
LJOLFEFE_1	183207	184667	STR_RS05265	0.0	Capsule	Immune modulation	96.17	100.21	WP_041827043
LJOLFEFE_1	179602	180967	STER_RS05300	0.0	Capsule	Immune modulation	95.24	99.85	WP_011681173
LJOLFEFE_255	68821	69672	rfbD	0.0	Capsule	Immune modulation	95.07	100.00	WP_014621820
LJOLFEFE_1	179600	180967	STU_RS14630	0.0	Capsule	Immune modulation	94.30	100.00	WP_011226045
LJOLFEFE_365	73952	74545	STR_RS05880	0.0	Capsule	Immune modulation	94.11	100.00	WP_011226149
LJOLFEFE_365	73952	74545	STER_RS06030	0.0	Capsule	Immune modulation	93.94	100.00	WP_011226149
LJOLFEFE_365	73952	74545	STU_RS15260	0.0	Capsule	Immune modulation	93.94	100.00	WP_011226149
LJOLFEFE_1	181024	181764	STER_RS05305	0.0	Capsule	Immune modulation	93.79	100.00	WP_011681174
LJOLFEFE_1	181024	181764	STU_RS14635	0.0	Capsule	Immune modulation	93.12	100.00	WP_011226046
LJOLFEFE_255	64566	65336	STER_RS07075	0.0	Capsule	Immune modulation	93.00	99.10	WP_011681440
LJOLFEFE_1	181029	181764	STR_RS05250	0.0	Capsule	Immune modulation	92.53	98.13	WP_011227246
LJOLFEFE_255	67444	68702	STER_RS07100	0.0	Capsule	Immune modulation	92.22	99.92	WP_011681445
LJOLFEFE_1	182475	183206	STU_RS14645	0.0	Capsule	Immune modulation	92.08	100.00	WP_011226048
LJOLFEFE_1	182475	183206	STER_RS05315	0.0	Capsule	Immune modulation	91.67	100.00	WP_011681176
LJOLFEFE_1	65642	67300	fbp54	0.0	FBPs	Adherence	91.20	99.94	WP_011227179
LJOLFEFE_1	182475	183206	STR_RS05260	0.0	Capsule	Immune modulation	91.12	100.00	WP_011227248
LJOLFEFE_365	73083	73952	rfbA	0.0	Capsule	Immune modulation	90.92	100.00	WP_011681286
LJOLFEFE_1	181774	182466	STR_RS05255	0.0	Capsule	Immune modulation	88.92	99.71	WP_011227247
LJOLFEFE_1	181774	182466	STU_RS14640	0.0	Capsule	Immune modulation	88.92	99.71	WP_011226047
LJOLFEFE_388	14267	15277	plr/gapA	0.0	Streptococcal plasmin receptor/GAPDH	Adherence	88.45	99.80	WP_002986042
LJOLFEFE_256	19024	19863	cbpD	0.0	Autolysin	Exoenzyme	88.35	99.88	WP_011226733
LJOLFEFE_211	31198	32501	eno	0.0	Streptococcal enolase	Exoenzyme	88.17	99.54	WP_000022832
LJOLFEFE_1	181774	182466	STER_RS05310	0.0	Capsule	Immune modulation	87.05	99.71	WP_011681175
LJOLFEFE_1027	3804	4565	srtA	0.0	Sortase A	Exoenzyme	83.90	99.74	-
LJOLFEFE_365	74817	75863	rfbB	0.0	Capsule	Immune modulation	81.51	99.90	WP_009659423
LJOLFEFE_476	131038	132321	tig/ropA	0.0	Trigger factor	Stress survival	80.92	99.61	WP_000107753

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
LJOLFEFE_1027	12696	13769	MntE	0.0	manganese homeostasis	96.09	99.72	ABF32167
LJOLFEFE_1027	1115	141	ldh(Sp_1220)	0.0	L-lactate dehydrogenase	96.00	99.09	AAK75326
LJOLFEFE_696	87728	85422	pfl2(Sp_0459)	0.0	formate acetyltransferase	94.54	99.22	AAK74619
LJOLFEFE_586	84679	83198	SPD_0310	0.0	UPF0371 protein SPD_0310	92.92	100.00	ABJ54480
LJOLFEFE_366	12652	11684	spr0084	0.0	pathogenitcity related	92.57	98.48	AAK98888
LJOLFEFE_1027	31755	34001	metE	0.0	methionine biosynthesis enzymes	92.12	100.00	AAK74738
LJOLFEFE_488	2	6214	PrtA	0.0	serine protease	91.51	96.55	ABJ55268
LJOLFEFE_256	4322	5293	prsA2	0.0	ribose-phosphate pyrophosphokinase	91.36	100.00	ABF36968
LJOLFEFE_365	42183	43913	ptsI	0.0	phosphoenolpyruvate-protein phosphotransferase	89.78	100.00	AAK34199
LJOLFEFE_255	82079	80091	uvrB	0.0	excinuclease ABC, B subunit	89.59	100.00	AE014259_2
LJOLFEFE_255	110485	109334	potA	0.0	ABC transporter ATP-binding protein-spermidine/putrescine transport	89.58	99.74	AAL00050
LJOLFEFE_189	36974	35496	IMPDH	0.0	inosine-5'-monophosphate dehydrogenase	87.42	100.00	ADE32434
LJOLFEFE_211	32501	31200	Eno	0.0	enolase	86.44	99.77	ABP90468
LJOLFEFE_189	21630	19738	gidA	0.0	tRNA uridine 5-carboxymethylaminomethyl modification enzyme	85.26	98.90	ABP91129
LJOLFEFE_1027	36923	35214	PGM	0.0	phosphoglucomutase	84.76	99.65	ACH87041
LJOLFEFE_256	41841	42932	recA	0.0	DNA recombination and repair	84.64	95.36	AAL00560
LJOLFEFE_178	28548	29558	pdh	0.0	pyruvate dehydrogenase	83.09	99.70	ABP91006
LJOLFEFE_1	92523	91162	mnmE	0.0	central tRNA-modifying GTPase	82.67	99.56	ABP90420
LJOLFEFE_211	46910	46020	bglB	3.11e-178	putative phospho--glucosidase	87.54	99.66	AAK33487
LJOLFEFE_1	3486	2536	SP_0676	3.21e-170	transcription facot	81.39	98.45	AAK74821
LJOLFEFE_1027	34191	35048	metF	3.16e-169	methionine biosynthesis enzymes	87.06	99.31	AAK74739
LJOLFEFE_300	403	1107	covR	1.26e-127	responder protein	85.53	100.00	AAK71319
LJOLFEFE_289	15405	16076	rr01	2.36e-127	response regulator	84.38	99.56	CAB54566
LJOLFEFE_1027	41587	42255	CiaR	2.53e-125	two-component response regulator	87.00	99.55	AAK74935
LJOLFEFE_1027	41587	42258	ciaR	2.51e-124	two component system response regulator	85.27	99.12	AIK75708
LJOLFEFE_300	403	1107	walR	2.87e-121	DNA-binding response regulator	82.13	100.00	ANC99504
LJOLFEFE_807	53782	53096	CovR	1.77e-120	serves to repress GAS virulence factor-encoding genes	81.66	100.00	ACE75886
LJOLFEFE_256	43108	43503	SpxA2	4.30e-76	transcriptional regulator	91.67	100.00	ERL21461
LJOLFEFE_1	103991	104392	SpxA1	4.14e-70	transcriptional regulator	82.84	100.00	ERL19273
LJOLFEFE_432	6266	5853	GrpE	1.24e-68	protein grpE	81.88	80.59	ABP89267
LJOLFEFE_807	30575	30288	spr0479	2.02e-48	essential gene	85.42	98.97	AAK99283
LJOLFEFE_113	30382	30636	spr1327	2.97e-45	essential gene	92.94	100.00	AAL00131
LJOLFEFE_916	53764	54027	spr0175	3.81e-43	pathogenitcity related	85.23	100.00	AAK98979
LJOLFEFE_916	54590	54856	spr0177	6.63e-42	essential gene	83.15	88.12	AAK98981
LJOLFEFE_476	130871	130380	RopE (M5005_Spy_1611)	6.51e-73	probable DNA-directed RNA polymerase subunit delta	82.93	85.86	AAK34603
LJOLFEFE_696	87728	85428	PFL (B9H01_RS01125)	0.0	formate C-acetyltransferase	83.22	98.08	MYN69560
LJOLFEFE_916	1216	197	ilvC (SPD_0406)	0.0	ketol-acid reductoisomerase (NADP(+))	97.35	100.00	ABJ55451