Genome ID:GCA_021128895.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 7 | 7.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJLEMKCN_21 | 57908 | 58957 | clbA | ARO:3002814 | clbA | 98.57 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CJLEMKCN_21 | 57922 | 58957 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.42 | 98.67 | KR610408 |
| CJLEMKCN_26 | 215045 | 216431 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 86.23 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJLEMKCN_21 | 57911 | 58957 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 98.57 | 100.00 | WP_012116915.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CJLEMKCN_11 | 79959 | 81140 | capB | 0.0 | Capsule | Immune modulation | 82.29 | 99.66 | NP_391471 |
| CJLEMKCN_11 | 79495 | 79944 | capC | 2.16e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CJLEMKCN_30 | 31731 | 32867 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| CJLEMKCN_4 | 4307 | 5176 | pdxS | 1.35e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| CJLEMKCN_1 | 346724 | 345948 | CodY | 1.27e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| CJLEMKCN_1 | 820602 | 820210 | spxA1 | 2.32e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| CJLEMKCN_21 | 72498 | 72301 | CspA | 2.35e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| CJLEMKCN_24 | 235219 | 235025 | CspD | 9.74e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| CJLEMKCN_24 | 235219 | 235022 | CspB | 2.02e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| CJLEMKCN_21 | 72498 | 72304 | CspR | 3.08e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| CJLEMKCN_17 | 289407 | 290279 | lipA (SAUSA300_0829) | 1.38e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |