Genome ID:GCA_021128895.1 PPRS_table
 

Potential risk score of uploaded strain

ARGs VFs PGs PPRS
2277.55

CARD

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
CJLEMKCN_215790858957clbAARO:3002814clbA98.57100.00CP006845.1

Resfinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
CJLEMKCN_215792258957cfr(B)Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin88.4298.67KR610408
CJLEMKCN_26215045216431tet(L)Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline86.23100.00X08034

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
CJLEMKCN_215791158957clbA23S rRNA (adenine(2503)-C(8))-methyltransferase ClbABLASTX98.57100.00WP_012116915.1

Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
CJLEMKCN_117995981140capB0.0CapsuleImmune modulation82.2999.66NP_391471
CJLEMKCN_117949579944capC2.16e-114CapsuleImmune modulation83.5999.78NP_391470

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
CJLEMKCN_303173132867tufA0.0elongation factor Tu86.8195.69AHM69299
CJLEMKCN_443075176pdxS1.35e-152encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS84.8398.31ACE61268
CJLEMKCN_1346724345948CodY1.27e-124nutrient-responsive regulator81.08100.00ACJ80679
CJLEMKCN_1820602820210spxA12.32e-69redox-responsive transcription factor83.21100.00AAF21893
CJLEMKCN_217249872301CspA2.35e-31cold shock protein90.91100.00CAA62903
CJLEMKCN_24235219235025CspD9.74e-28cold shock protein80.0098.48CAC99957
CJLEMKCN_24235219235022CspB2.02e-27cold shock protein80.30100.00CAD00094
CJLEMKCN_217249872304CspR3.08e-26cold shock protein80.0098.48AAO82613
CJLEMKCN_17289407290279lipA (SAUSA300_0829)1.38e-162lipoic acid synthetase80.8295.41ABD22039