Genome ID:GCA_021412065.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPLDNLIK_89 | 36510 | 38435 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| GPLDNLIK_54 | 1274 | 2011 | ErmB | ARO:3000375 | ErmB | 98.37 | 98.79 | AF242872.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GPLDNLIK_89 | 36510 | 38435 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| GPLDNLIK_54 | 1274 | 2011 | erm(B) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.59 | 100.00 | U18931 |
| GPLDNLIK_12 | 610737 | 611954 | mef(A) | Erythromycin, Azithromycin | 95.07 | 100.00 | AF227520 |
| GPLDNLIK_12 | 373434 | 374384 | cfxA3 | Ampicillin | 86.01 | 98.34 | AF472622 |
| GPLDNLIK_12 | 373434 | 374384 | cfxA4 | Unknown Beta-lactam | 86.01 | 98.34 | AY769933 |
| GPLDNLIK_12 | 373434 | 374384 | cfxA5 | Unknown Beta-lactam | 86.01 | 98.34 | AY769934 |
| GPLDNLIK_12 | 373434 | 374384 | cfxA | Cefoxitin, Ampicillin | 86.01 | 98.34 | U38243 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPLDNLIK_89 | 36510 | 38432 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| GPLDNLIK_54 | 1277 | 2011 | erm(B) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B) | BLASTX | 98.78 | 100.00 | WP_002292226.1 |
| GPLDNLIK_12 | 610734 | 611954 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
| GPLDNLIK_12 | 373433 | 374386 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 83.65 | 99.07 | WP_004339683.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||