Genome ID:GCA_023521275.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 4 | 16.12 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMCCGKEK_1 | 3977298 | 3978467 | bmr | ARO:3003007 | bmr | 99.49 | 100.00 | M33768.1 |
| PMCCGKEK_1 | 3745102 | 3746304 | blt | ARO:3003006 | blt | 99.50 | 100.00 | L32599.1 |
| PMCCGKEK_1 | 3727154 | 3728008 | aadK | ARO:3002627 | aadK | 98.24 | 100.00 | AL009126.1 |
| PMCCGKEK_1 | 1973712 | 1974632 | mphK | ARO:3004541 | mphK | 98.68 | 100.00 | CP010314.1 |
| PMCCGKEK_1 | 1960384 | 1961817 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.00 | JYFL01000006.1 |
| PMCCGKEK_1 | 1910724 | 1911317 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| PMCCGKEK_1 | 1630966 | 1632612 | vmlR | ARO:3004476 | vmlR | 98.54 | 100.18 | NC_000964.3 |
| PMCCGKEK_1 | 1318143 | 1320713 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.42 | 100.00 | AL009126.3 |
| PMCCGKEK_1 | 855443 | 855781 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| PMCCGKEK_1 | 855126 | 855443 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PMCCGKEK_1 | 1973712 | 1974632 | mph(K) | Spiramycin, Telithromycin | 99.02 | 100.00 | NC_000964 |
| PMCCGKEK_1 | 3727154 | 3728008 | aadK | Streptomycin | 98.83 | 100.00 | M26879 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMCCGKEK_1 | 1973724 | 1974632 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.68 | 99.02 | WP_003246254.1 |
| PMCCGKEK_1 | 1630966 | 1632609 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.54 | 100.00 | WP_003234144.1 |
| PMCCGKEK_1 | 3727154 | 3728005 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.24 | 100.00 | WP_003229862.1 |
| PMCCGKEK_1 | 2277473 | 2277991 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 92.49 | 100.00 | WP_003242546.1 |
| PMCCGKEK_1 | 125781 | 128378 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.60 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PMCCGKEK_1 | 2760695 | 2761876 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| PMCCGKEK_1 | 23734 | 24375 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.53 | 100.00 | NP_390062 |
| PMCCGKEK_1 | 3169663 | 3170448 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| PMCCGKEK_1 | 3173346 | 3174284 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.25 | 100.00 | NP_391077 |
| PMCCGKEK_1 | 2761891 | 2762340 | capC | 0.0 | Capsule | Immune modulation | 99.11 | 100.00 | NP_391470 |
| PMCCGKEK_1 | 172303 | 174066 | dep/capD | 0.0 | Capsule | Immune modulation | 99.04 | 100.00 | NP_389723 |
| PMCCGKEK_1 | 2762359 | 2763501 | capA | 0.0 | Capsule | Immune modulation | 98.95 | 100.00 | NP_391469 |
| PMCCGKEK_1 | 3174304 | 3181440 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.50 | 100.00 | NP_391076 |
| PMCCGKEK_1 | 3170474 | 3171670 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.41 | 100.00 | NP_391079 |
| PMCCGKEK_1 | 3171699 | 3173318 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.41 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PMCCGKEK_1 | 2114787 | 2113651 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| PMCCGKEK_1 | 2228527 | 2227658 | pdxS | 3.08e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| PMCCGKEK_1 | 543801 | 543025 | CodY | 5.41e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| PMCCGKEK_1 | 2920044 | 2919475 | ClpP | 2.50e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |