Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 1 | 4 | 5.74 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PIKALECD_93 | 38177 | 39229 | clbC | ARO:3002816 | clbC | 97.71 | 100.00 | AP006627.1 |
| PIKALECD_104 | 24726 | 25496 | ANT(4')-Ib | ARO:3003905 | ANT(4')-Ib | 93.75 | 100.00 | EF540343.1 |
| PIKALECD_56 | 678 | 1523 | Erm(34) | ARO:3000600 | Erm(34) | 100.00 | 100.00 | AY234334.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PIKALECD_56 | 678 | 1523 | erm(34) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 100.00 | 100.00 | AY234334 |
| PIKALECD_104 | 24726 | 25496 | ant(4')-Ib | Amikacin, Tobramycin, Isepamicin, Dibekacin | 94.29 | 100.00 | AJ506108 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PIKALECD_56 | 681 | 1523 | erm(34) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(34) | EXACTX | 100.00 | 100.00 | WP_063844504.1 |
| PIKALECD_93 | 38180 | 39229 | clbB | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbB | BLASTX | 97.71 | 100.00 | WP_011245929.1 |
| PIKALECD_104 | 21410 | 22312 | blaBCL | BCL family class A beta-lactamase | BLASTX | 97.34 | 100.00 | WP_065825670.1 |
| PIKALECD_104 | 24729 | 25496 | aadD2 | aminoglycoside O-nucleotidyltransferase ANT(4')-Ib | BLASTX | 93.75 | 100.00 | WP_035202393.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PIKALECD_49 | 332069 | 332719 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 97.39 | 100.00 | WP_011247375 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PIKALECD_47 | 33361 | 34503 | tufA | 0.0 | elongation factor Tu | 87.14 | 96.19 | AHM69299 |
| PIKALECD_45 | 36887 | 37129 | SpoVG | 2.59e-37 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| PIKALECD_62 | 1735 | 1932 | CspA | 6.05e-31 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| PIKALECD_46 | 54697 | 54885 | CspB | 9.50e-26 | cold shock protein | 82.54 | 95.45 | CAD00094 |