Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 7 | 7.35 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKDOJPKJ_71 | 52129 | 53178 | clbA | ARO:3002814 | clbA | 97.71 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PKDOJPKJ_71 | 52143 | 53178 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.32 | 98.67 | KR610408 |
| PKDOJPKJ_69 | 173611 | 174987 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 87.00 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PKDOJPKJ_71 | 52135 | 53178 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 97.99 | 99.71 | WP_012116915.1 |
| PKDOJPKJ_69 | 173611 | 174981 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| PKDOJPKJ_42 | 457679 | 458860 | capB | 0.0 | Capsule | Immune modulation | 82.46 | 99.66 | NP_391471 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PKDOJPKJ_37 | 31667 | 32803 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| PKDOJPKJ_52 | 4451 | 3582 | pdxS | 6.80e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| PKDOJPKJ_62 | 291154 | 291930 | CodY | 4.80e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| PKDOJPKJ_20 | 284408 | 284016 | spxA1 | 9.43e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| PKDOJPKJ_71 | 67697 | 67500 | CspA | 1.22e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| PKDOJPKJ_21 | 100280 | 100086 | CspD | 4.98e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| PKDOJPKJ_21 | 100280 | 100083 | CspB | 1.03e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| PKDOJPKJ_71 | 67697 | 67503 | CspR | 1.60e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| PKDOJPKJ_42 | 97375 | 96503 | lipA (SAUSA300_0829) | 1.33e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |