Genome ID:GCA_024125465.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 5 | 0 | 2 | 5.39 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPFDEDJL_8 | 23983 | 24468 | lnuA | ARO:3002835 | lnuA | 97.52 | 100.00 | M14039.1 |
| JPFDEDJL_8 | 19000 | 20376 | tet(L) | ARO:3000179 | tet(L) | 98.25 | 100.00 | M11036.1 |
| JPFDEDJL_8 | 16881 | 18806 | tet(M) | ARO:3000186 | tet(M) | 98.75 | 100.31 | AB039845.1 |
| JPFDEDJL_17 | 5306 | 6715 | fexB | ARO:3007019 | fexB | 98.72 | 100.00 | JN201336.1 |
| JPFDEDJL_21 | 54 | 1682 | poxtA | ARO:3004470 | poxtA | 99.08 | 100.00 | MF095097.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JPFDEDJL_21 | 54 | 1682 | poxtA | Chloramphenicol, Florfenicol, Linezolid, Doxycycline, Tetracycline | 99.69 | 100.00 | MF095097 |
| JPFDEDJL_17 | 5306 | 6715 | fexB | Chloramphenicol, Florfenicol | 99.57 | 100.00 | JN201336 |
| JPFDEDJL_8 | 19001 | 20376 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.49 | 99.93 | AY081910 |
| JPFDEDJL_8 | 16881 | 18806 | tet(M) | Doxycycline, Tetracycline, Minocycline | 99.48 | 100.00 | X75073 |
| JPFDEDJL_8 | 23983 | 24468 | lnu(A) | Lincomycin | 98.56 | 100.00 | M14039 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JPFDEDJL_8 | 23983 | 24465 | lnu(A) | lincosamide nucleotidyltransferase Lnu(A) | EXACTX | 100.00 | 100.00 | WP_001829870.1 |
| JPFDEDJL_8 | 16881 | 18803 | tet(M) | tetracycline resistance ribosomal protection protein Tet(M) | BLASTX | 99.38 | 100.00 | WP_000691727.1 |
| JPFDEDJL_21 | 57 | 1682 | poxtA | ABC-F type ribosomal protection protein PoxtA | BLASTX | 99.08 | 100.00 | WP_002415638.1 |
| JPFDEDJL_17 | 5306 | 6712 | fexB | chloramphenicol/florfenicol efflux MFS transporter FexB | BLASTX | 98.72 | 100.00 | WP_002415211.1 |
| JPFDEDJL_8 | 19000 | 20373 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_002294500.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JPFDEDJL_61 | 22930 | 22223 | WalR | 2.70e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| JPFDEDJL_33 | 47801 | 47998 | CspR | 2.13e-28 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| JPFDEDJL_33 | 47801 | 47995 | CspA | 1.04e-27 | cold shock protein | 81.54 | 98.48 | CAA62903 |