Genome ID:GCA_024300805.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 2 | 4 | 5.39 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| INIABOHE_1 | 533870 | 534919 | clbA | ARO:3002814 | clbA | 99.43 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| INIABOHE_1 | 533870 | 534905 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.80 | 98.67 | KR610408 |
| INIABOHE_1 | 2708416 | 2709791 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 86.93 | 99.93 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| INIABOHE_1 | 533870 | 534916 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.43 | 100.00 | WP_012116915.1 |
| INIABOHE_1 | 2708709 | 2709791 | tet(L) | tetracycline efflux MFS transporter Tet(L) | PARTIALX | 88.09 | 78.82 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| INIABOHE_1 | 3723788 | 3724969 | capB | 0.0 | Capsule | Immune modulation | 81.96 | 99.66 | NP_391471 |
| INIABOHE_1 | 3723324 | 3723773 | capC | 7.30e-112 | Capsule | Immune modulation | 83.37 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| INIABOHE_1 | 102203 | 103339 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| INIABOHE_1 | 4226551 | 4227420 | pdxS | 3.54e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| INIABOHE_1 | 1643000 | 1643776 | CodY | 5.01e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| INIABOHE_1 | 3311248 | 3310376 | lipA (SAUSA300_0829) | 1.36e-161 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |