Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 1 | 7 | 7.68 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NCMCLLKC_31 | 50874 | 51923 | clbA | ARO:3002814 | clbA | 97.42 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NCMCLLKC_31 | 50888 | 51923 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 87.64 | 98.67 | KR610408 |
| NCMCLLKC_23 | 193569 | 194945 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 86.64 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NCMCLLKC_31 | 50880 | 51923 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 97.70 | 99.71 | WP_012116915.1 |
| NCMCLLKC_23 | 193575 | 194945 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
| NCMCLLKC_23 | 195158 | 195676 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 80.35 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NCMCLLKC_12 | 371956 | 373137 | capB | 0.0 | Capsule | Immune modulation | 82.29 | 99.66 | NP_391471 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NCMCLLKC_3 | 31685 | 32821 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| NCMCLLKC_8 | 4275 | 5144 | pdxS | 8.92e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| NCMCLLKC_1 | 328990 | 328214 | CodY | 1.28e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| NCMCLLKC_1 | 829023 | 828631 | spxA1 | 2.33e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| NCMCLLKC_31 | 70469 | 70272 | CspA | 1.24e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| NCMCLLKC_32 | 186483 | 186677 | CspD | 5.17e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| NCMCLLKC_32 | 186483 | 186680 | CspB | 1.07e-27 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| NCMCLLKC_31 | 70469 | 70275 | CspR | 1.62e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| NCMCLLKC_12 | 15055 | 14183 | lipA (SAUSA300_0829) | 2.77e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |