Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 4 | 6.00 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMFOMPFH_1 | 533777 | 534826 | clbA | ARO:3002814 | clbA | 99.43 | 100.00 | CP006845.1 |
| CMFOMPFH_1 | 122456 | 126037 | Bacillus subtilis rpoB mutants conferring resistance to rifampin | ARO:3007073 | Bsub_rpoB_RIF | 98.24 | 100.00 | AL009126.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CMFOMPFH_1 | 533777 | 534812 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.61 | 98.67 | KR610408 |
| CMFOMPFH_1 | 2547664 | 2549040 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 86.87 | 99.93 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CMFOMPFH_1 | 533777 | 534823 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.43 | 100.00 | WP_012116915.1 |
| CMFOMPFH_1 | 2547670 | 2549040 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 87.31 | 99.78 | WP_003242953.1 |
| CMFOMPFH_1 | 2549253 | 2549771 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 80.35 | 100.00 | WP_003242546.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| CMFOMPFH_1 | 3442327 | 3443508 | capB | 0.0 | Capsule | Immune modulation | 82.21 | 99.66 | NP_391471 |
| CMFOMPFH_1 | 3441863 | 3442312 | capC | 1.46e-113 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CMFOMPFH_1 | 133409 | 134545 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| CMFOMPFH_1 | 18619 | 19488 | pdxS | 3.28e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| CMFOMPFH_1 | 1614961 | 1615737 | CodY | 4.65e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| CMFOMPFH_1 | 3065368 | 3064496 | lipA (SAUSA300_0829) | 1.26e-161 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |