Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 8 | 8.06 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNGBEAJH_272 | 1127 | 1987 | TEM-116 | ARO:3000979 | TEM-116 | 100.00 | 100.00 | U36911.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LNGBEAJH_272 | 1127 | 1987 | blaTEM-116 | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 100.00 | 100.00 | AY425988 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LNGBEAJH_272 | 1130 | 1987 | blaTEM-116 | broad-spectrum class A beta-lactamase TEM-116 | ALLELEX | 100.00 | 100.00 | WP_000027050.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LNGBEAJH_258 | 17045 | 18196 | tufA | 0.0 | elongation factor Tu | 86.46 | 97.21 | AHM69299 |
| LNGBEAJH_914 | 4686 | 5555 | pdxS | 8.40e-153 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| LNGBEAJH_1 | 142987 | 142211 | CodY | 2.02e-127 | nutrient-responsive regulator | 81.47 | 100.00 | ACJ80679 |
| LNGBEAJH_1 | 142987 | 142211 | codY | 4.89e-124 | global regulator and isoleucine sensor | 80.31 | 100.00 | ASW39076 |
| LNGBEAJH_535 | 76535 | 77104 | ClpP | 4.07e-104 | part of proteolytic complex | 83.68 | 97.44 | BAB94595 |
| LNGBEAJH_224 | 368 | 760 | spxA1 | 3.76e-73 | redox-responsive transcription factor | 88.55 | 100.00 | AAF21893 |
| LNGBEAJH_224 | 368 | 760 | spx | 8.13e-68 | essential gene which is a thiol/oxidative stress sensor | 80.92 | 100.00 | BAB57159 |
| LNGBEAJH_113 | 18330 | 18572 | SpoVG | 1.95e-39 | RNA-binding protein | 82.72 | 79.41 | AAT02994 |
| LNGBEAJH_366 | 489 | 292 | CspA | 6.51e-35 | cold shock protein | 86.36 | 100.00 | CAA62903 |
| LNGBEAJH_366 | 489 | 295 | CspR | 2.74e-31 | cold shock protein | 81.54 | 98.48 | AAO82613 |
| LNGBEAJH_1 | 35794 | 35988 | CspD | 2.88e-29 | cold shock protein | 81.54 | 98.48 | CAC99957 |
| LNGBEAJH_1 | 35794 | 35991 | CspB | 1.94e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |