Genome ID:GCA_024653455.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 7 | 7.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGDADLMN_63 | 1665 | 2714 | clbA | ARO:3002814 | clbA | 99.14 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KGDADLMN_63 | 1665 | 2700 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.61 | 98.67 | KR610408 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KGDADLMN_63 | 1665 | 2711 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.14 | 100.00 | WP_012116915.1 |
| KGDADLMN_51 | 10438 | 13032 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.11 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KGDADLMN_36 | 20609 | 21790 | capB | 0.0 | Capsule | Immune modulation | 82.12 | 99.66 | NP_391471 |
| KGDADLMN_36 | 20145 | 20594 | capC | 1.53e-115 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KGDADLMN_22 | 27967 | 26831 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| KGDADLMN_70 | 12464 | 11595 | pdxS | 1.35e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| KGDADLMN_62 | 15482 | 14706 | CodY | 2.35e-126 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| KGDADLMN_3 | 122606 | 122998 | spxA1 | 2.77e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| KGDADLMN_52 | 16325 | 16522 | CspA | 1.71e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| KGDADLMN_35 | 15107 | 14913 | CspD | 1.12e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| KGDADLMN_35 | 15107 | 14910 | CspB | 2.32e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| KGDADLMN_52 | 16325 | 16519 | CspR | 2.24e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| KGDADLMN_19 | 1176 | 2048 | lipA (SAUSA300_0829) | 1.93e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |