Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 7 | 7.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DAHANLGE_8 | 50499 | 51548 | clbA | ARO:3002814 | clbA | 99.43 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DAHANLGE_8 | 50513 | 51548 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 89.00 | 98.67 | KR610408 |
| DAHANLGE_11 | 106419 | 107359 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 85.35 | 68.34 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DAHANLGE_8 | 50502 | 51548 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.43 | 100.00 | WP_012116915.1 |
| DAHANLGE_3 | 105744 | 108338 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.11 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DAHANLGE_18 | 50564 | 51745 | capB | 0.0 | Capsule | Immune modulation | 82.12 | 99.66 | NP_391471 |
| DAHANLGE_18 | 51760 | 52209 | capC | 3.27e-115 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DAHANLGE_23 | 31636 | 32772 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| DAHANLGE_36 | 4267 | 5136 | pdxS | 1.34e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| DAHANLGE_1 | 352699 | 353475 | CodY | 5.27e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| DAHANLGE_28 | 37246 | 36854 | spxA1 | 9.30e-71 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| DAHANLGE_8 | 69064 | 68867 | CspA | 8.34e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| DAHANLGE_15 | 21977 | 22171 | CspD | 2.53e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| DAHANLGE_15 | 21977 | 22174 | CspB | 5.24e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| DAHANLGE_8 | 69064 | 68870 | CspR | 1.09e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| DAHANLGE_12 | 68215 | 67343 | lipA (SAUSA300_0829) | 3.47e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |