Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 2 | 8 | 8.77 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GFLJGJKD_18 | 39118 | 40167 | clbA | ARO:3002814 | clbA | 98.57 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GFLJGJKD_18 | 39118 | 40153 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.80 | 98.67 | KR610408 |
| GFLJGJKD_34 | 263350 | 264726 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.07 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GFLJGJKD_18 | 39118 | 40161 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 98.85 | 99.71 | WP_012116915.1 |
| GFLJGJKD_34 | 263350 | 264720 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.65 | 99.78 | WP_003242953.1 |
| GFLJGJKD_23 | 177245 | 179839 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.57 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| GFLJGJKD_1 | 238130 | 239311 | capB | 0.0 | Capsule | Immune modulation | 82.12 | 99.66 | NP_391471 |
| GFLJGJKD_1 | 237666 | 238115 | capC | 1.65e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GFLJGJKD_9 | 31602 | 32738 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| GFLJGJKD_21 | 14817 | 13948 | pdxS | 5.86e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| GFLJGJKD_56 | 62163 | 61387 | CodY | 3.19e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| GFLJGJKD_16 | 9528 | 9920 | spxA1 | 1.04e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| GFLJGJKD_18 | 24023 | 24220 | CspA | 2.33e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| GFLJGJKD_12 | 27164 | 27358 | CspD | 9.62e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| GFLJGJKD_10 | 14064 | 14258 | CspB | 1.22e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| GFLJGJKD_18 | 24023 | 24217 | CspR | 3.05e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| GFLJGJKD_4 | 9101 | 9973 | lipA (SAUSA300_0829) | 4.42e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |