Genome ID:GCA_024790745.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 15 | 0 | 0 | 15.00 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DMCNLPFK_4 | 3002442 | 3004367 | tet(Q) | ARO:3000191 | tet(Q) | 97.35 | 97.56 | Z21523.1 |
| DMCNLPFK_3 | 1762907 | 1763872 | CfxA3 | ARO:3003003 | CfxA3 | 99.69 | 100.00 | AF472622.2 |
| DMCNLPFK_3 | 1490372 | 1491337 | CfxA3 | ARO:3003003 | CfxA3 | 99.69 | 100.00 | AF472622.2 |
| DMCNLPFK_3 | 1430298 | 1431263 | CfxA2 | ARO:3003002 | CfxA2 | 99.38 | 100.00 | AF118110.1 |
| DMCNLPFK_3 | 1216033 | 1216998 | CfxA3 | ARO:3003003 | CfxA3 | 99.69 | 100.00 | AF472622.2 |
| DMCNLPFK_4 | 865380 | 866345 | CfxA2 | ARO:3003002 | CfxA2 | 99.38 | 100.00 | AF118110.1 |
| DMCNLPFK_3 | 783120 | 785066 | tet(Q) | ARO:3000191 | tet(Q) | 97.49 | 98.63 | Z21523.1 |
| DMCNLPFK_4 | 125947 | 126762 | sul2 | ARO:3000412 | sul2 | 100.00 | 100.00 | AY055428.1 |
| DMCNLPFK_4 | 125083 | 125886 | APH(3'')-Ib | ARO:3002639 | APH(3'')-Ib | 99.63 | 100.00 | AF313472.2 |
| DMCNLPFK_4 | 124247 | 125083 | APH(6)-Id | ARO:3002660 | APH(6)-Id | 99.64 | 100.00 | AF024602.1 |
| DMCNLPFK_4 | 121533 | 123507 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| DMCNLPFK_3 | 91881 | 92744 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| DMCNLPFK_3 | 89818 | 90639 | ErmF | ARO:3000498 | ErmF | 99.62 | 102.63 | M17124.1 |
| DMCNLPFK_3 | 22647 | 23612 | CfxA3 | ARO:3003003 | CfxA3 | 99.69 | 100.00 | AF472622.2 |
| DMCNLPFK_2 | 2891 | 3238 | nimE | ARO:3007107 | nimE | 100.00 | 67.65 | CP036548.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DMCNLPFK_4 | 125083 | 125886 | aph(3'')-Ib | Streptomycin | 100.00 | 100.00 | AF321551 |
| DMCNLPFK_4 | 124247 | 125083 | aph(6)-Id | Streptomycin | 100.00 | 100.00 | M28829 |
| DMCNLPFK_4 | 125947 | 126762 | sul2 | Sulfamethoxazole | 100.00 | 100.00 | AY034138 |
| DMCNLPFK_4 | 121533 | 123458 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| DMCNLPFK_3 | 1216033 | 1216998 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| DMCNLPFK_3 | 89839 | 90639 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M17808 |
| DMCNLPFK_3 | 1430298 | 1431263 | cfxA3 | Ampicillin | 99.69 | 100.00 | AF472622 |
| DMCNLPFK_3 | 1430298 | 1431263 | cfxA4 | Unknown Beta-lactam | 99.69 | 100.00 | AY769933 |
| DMCNLPFK_3 | 1430298 | 1431263 | cfxA | Cefoxitin, Ampicillin | 99.69 | 100.00 | U38243 |
| DMCNLPFK_2 | 2734 | 3238 | nimE | Metronidazole | 98.44 | 98.44 | AM042593 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DMCNLPFK_3 | 91884 | 92744 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| DMCNLPFK_4 | 125086 | 125886 | aph(3'')-Ib | aminoglycoside O-phosphotransferase APH(3'')-Ib | EXACTX | 100.00 | 100.00 | WP_001082319.1 |
| DMCNLPFK_4 | 124250 | 125083 | aph(6)-Id | aminoglycoside O-phosphotransferase APH(6)-Id | EXACTX | 100.00 | 100.00 | WP_000480968.1 |
| DMCNLPFK_3 | 89839 | 90636 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | EXACTX | 100.00 | 100.00 | WP_002682030.1 |
| DMCNLPFK_4 | 125950 | 126762 | sul2 | sulfonamide-resistant dihydropteroate synthase Sul2 | EXACTX | 100.00 | 100.00 | WP_001043260.1 |
| DMCNLPFK_4 | 121536 | 123458 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| DMCNLPFK_3 | 1216033 | 1216995 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| DMCNLPFK_3 | 1490375 | 1491337 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| DMCNLPFK_3 | 1762907 | 1763869 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| DMCNLPFK_3 | 22647 | 23609 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.69 | 100.00 | WP_004339683.1 |
| DMCNLPFK_3 | 1430301 | 1431263 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
| DMCNLPFK_4 | 865380 | 866342 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 99.38 | 100.00 | WP_004339683.1 |
| DMCNLPFK_3 | 783153 | 785066 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.65 | 99.53 | WP_063856407.1 |
| DMCNLPFK_4 | 3002442 | 3004364 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.35 | 100.00 | WP_002560998.1 |
| DMCNLPFK_2 | 2915 | 3238 | nimE | 5-nitroimidazole reductase NimE | PARTIALX | 100.00 | 63.53 | WP_005812773.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||