Genome ID:GCA_024800645.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 12 | 10 | 3 | 15.91 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JGKKBJEC_1 | 2527650 | 2528504 | aadK | ARO:3002627 | aadK | 98.94 | 100.00 | AL009126.1 |
| JGKKBJEC_1 | 2509180 | 2510382 | blt | ARO:3003006 | blt | 99.25 | 100.00 | L32599.1 |
| JGKKBJEC_1 | 1404873 | 1405190 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| JGKKBJEC_1 | 1404535 | 1404873 | ykkC | ARO:3003063 | ykkC | 98.21 | 100.00 | AL009126.1 |
| JGKKBJEC_1 | 910472 | 913042 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.65 | 100.00 | AL009126.3 |
| JGKKBJEC_1 | 355532 | 356125 | tmrB | ARO:3003059 | tmrB | 99.49 | 100.00 | AL009126.3 |
| JGKKBJEC_1 | 306456 | 307889 | lmrB | ARO:3002813 | lmrB | 100.00 | 100.00 | JYFL01000006.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JGKKBJEC_1 | 4072920 | 4074296 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 99.06 | 100.00 | D12567 |
| JGKKBJEC_1 | 2527650 | 2528504 | aadK | Streptomycin | 98.83 | 100.00 | M26879 |
| JGKKBJEC_1 | 293642 | 294561 | mph(K) | Spiramycin, Telithromycin | 98.05 | 99.89 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JGKKBJEC_1 | 2527653 | 2528504 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.94 | 100.00 | WP_003229862.1 |
| JGKKBJEC_1 | 4072923 | 4074296 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_063856081.1 |
| JGKKBJEC_1 | 603082 | 604689 | vmlR | ABC-F type ribosomal protection protein VmlR | INTERNAL_STOP | 95.61 | 100.00 | WP_003234144.1 |
| JGKKBJEC_1 | 4070376 | 4070894 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 91.91 | 100.00 | WP_003242546.1 |
| JGKKBJEC_1 | 1982940 | 1985537 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.48 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JGKKBJEC_1 | 3576792 | 3577241 | capC | 0.0 | Capsule | Immune modulation | 99.56 | 100.00 | NP_391470 |
| JGKKBJEC_1 | 3577256 | 3578437 | capB | 0.0 | Capsule | Immune modulation | 99.49 | 100.00 | NP_391471 |
| JGKKBJEC_1 | 3575631 | 3576773 | capA | 0.0 | Capsule | Immune modulation | 99.30 | 100.00 | NP_391469 |
| JGKKBJEC_1 | 3125556 | 3126341 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.11 | 100.00 | NP_391080 |
| JGKKBJEC_1 | 1929554 | 1931317 | dep/capD | 0.0 | Capsule | Immune modulation | 98.98 | 100.00 | NP_389723 |
| JGKKBJEC_1 | 2111727 | 2112368 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 98.91 | 100.00 | NP_390062 |
| JGKKBJEC_1 | 3121731 | 3122669 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.83 | 100.00 | NP_391077 |
| JGKKBJEC_1 | 3114575 | 3121711 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.70 | 100.00 | NP_391076 |
| JGKKBJEC_1 | 3124334 | 3125530 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.58 | 100.00 | NP_391079 |
| JGKKBJEC_1 | 3122697 | 3124316 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.28 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JGKKBJEC_1 | 134988 | 136124 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| JGKKBJEC_1 | 1714076 | 1714852 | CodY | 3.35e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| JGKKBJEC_1 | 3424436 | 3425005 | ClpP | 2.48e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |