Genome ID:GCA_025186945.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 34 | 33 | 47.38 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| BHPDJJLM_16 | 26707 | 27558 | rfbD | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_014621820 |
| BHPDJJLM_22 | 65295 | 66056 | srtA | 0.0 | Sortase A | Exoenzyme | 100.00 | 100.00 | - |
| BHPDJJLM_32 | 22254 | 23204 | STR_RS05210 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011227238 |
| BHPDJJLM_32 | 21147 | 22229 | STR_RS05215 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011227239 |
| BHPDJJLM_32 | 20083 | 21057 | STR_RS05220 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011227240 |
| BHPDJJLM_32 | 19598 | 20077 | STR_RS05225 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_041827041 |
| BHPDJJLM_32 | 15997 | 16596 | STR_RS05245 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_196767671 |
| BHPDJJLM_32 | 15111 | 15860 | STR_RS05250 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011227246 |
| BHPDJJLM_32 | 13669 | 14400 | STR_RS05260 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011227248 |
| BHPDJJLM_22 | 29938 | 30531 | STR_RS05880 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011226149 |
| BHPDJJLM_16 | 14229 | 15974 | STR_RS06885 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011227426 |
| BHPDJJLM_16 | 15976 | 17676 | STR_RS06890 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_041827077 |
| BHPDJJLM_16 | 18896 | 19702 | STR_RS06900 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011227429 |
| BHPDJJLM_16 | 19702 | 20643 | STR_RS06905 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011227430 |
| BHPDJJLM_16 | 20640 | 21788 | STR_RS06910 | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | WP_011227431 |
| BHPDJJLM_37 | 16808 | 18466 | fbp54 | 0.0 | FBPs | Adherence | 99.94 | 100.00 | WP_011227179 |
| BHPDJJLM_32 | 24096 | 25517 | STR_RS05200 | 0.0 | Capsule | Immune modulation | 99.93 | 100.00 | WP_011227236 |
| BHPDJJLM_32 | 12214 | 13668 | STR_RS05265 | 0.0 | Capsule | Immune modulation | 99.93 | 100.00 | WP_041827043 |
| BHPDJJLM_16 | 17694 | 18896 | STR_RS06895 | 0.0 | Capsule | Immune modulation | 99.92 | 100.00 | WP_011227428 |
| BHPDJJLM_32 | 18287 | 19405 | STR_RS05230 | 0.0 | Capsule | Immune modulation | 99.91 | 100.00 | WP_148148887 |
| BHPDJJLM_32 | 27211 | 28269 | waaB | 0.0 | Capsule | Immune modulation | 99.91 | 100.00 | WP_157822584 |
| BHPDJJLM_32 | 16760 | 17719 | STR_RS05240 | 0.0 | Capsule | Immune modulation | 99.90 | 100.00 | WP_041827042 |
| BHPDJJLM_32 | 23164 | 24088 | STR_RS05205 | 0.0 | Capsule | Immune modulation | 99.89 | 100.00 | WP_011227237 |
| BHPDJJLM_32 | 14409 | 15101 | STR_RS05255 | 0.0 | Capsule | Immune modulation | 99.86 | 100.00 | WP_011227247 |
| BHPDJJLM_22 | 29938 | 30531 | STER_RS06030 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011226149 |
| BHPDJJLM_22 | 29938 | 30531 | STU_RS15260 | 0.0 | Capsule | Immune modulation | 99.83 | 100.00 | WP_011226149 |
| BHPDJJLM_16 | 15976 | 17676 | STER_RS07050 | 0.0 | Capsule | Immune modulation | 99.71 | 100.00 | WP_041827753 |
| BHPDJJLM_32 | 14409 | 15101 | STU_RS14640 | 0.0 | Capsule | Immune modulation | 99.57 | 100.00 | WP_011226047 |
| BHPDJJLM_16 | 17694 | 18896 | STER_RS07055 | 0.0 | Capsule | Immune modulation | 99.50 | 100.00 | WP_011681436 |
| BHPDJJLM_16 | 18896 | 19702 | STER_RS07060 | 0.0 | Capsule | Immune modulation | 99.50 | 100.00 | WP_011681437 |
| BHPDJJLM_16 | 19702 | 20643 | STER_RS07065 | 0.0 | Capsule | Immune modulation | 99.47 | 100.00 | WP_011681438 |
| BHPDJJLM_17 | 50800 | 51768 | cbpD | 0.0 | Autolysin | Exoenzyme | 99.38 | 100.00 | WP_082302295 |
| BHPDJJLM_14 | 52170 | 52960 | cshA | 0.0 | Cell surface hydrophobicity proteins | Adherence | 99.37 | 100.00 | - |
| BHPDJJLM_16 | 20640 | 21788 | STER_RS07070 | 0.0 | Capsule | Immune modulation | 99.22 | 100.00 | WP_011681439 |
| BHPDJJLM_22 | 30531 | 31400 | rfbA | 0.0 | Capsule | Immune modulation | 99.19 | 100.00 | WP_011681286 |
| BHPDJJLM_32 | 13669 | 14400 | STU_RS14645 | 0.0 | Capsule | Immune modulation | 98.77 | 100.00 | WP_011226048 |
| BHPDJJLM_32 | 15111 | 15846 | STER_RS05305 | 0.0 | Capsule | Immune modulation | 98.50 | 99.33 | WP_011681174 |
| BHPDJJLM_32 | 13669 | 14400 | STER_RS05315 | 0.0 | Capsule | Immune modulation | 98.22 | 100.00 | WP_011681176 |
| BHPDJJLM_16 | 14229 | 15974 | STER_RS07045 | 0.0 | Capsule | Immune modulation | 98.22 | 100.00 | WP_011681434 |
| BHPDJJLM_32 | 12214 | 13668 | STU_RS14650 | 0.0 | Capsule | Immune modulation | 98.01 | 100.00 | WP_011226049 |
| BHPDJJLM_32 | 15111 | 15846 | STU_RS14635 | 0.0 | Capsule | Immune modulation | 97.96 | 99.33 | WP_011226046 |
| BHPDJJLM_16 | 25327 | 26586 | STER_RS07100 | 0.0 | Capsule | Immune modulation | 97.70 | 100.00 | WP_011681445 |
| BHPDJJLM_32 | 12214 | 13668 | STER_RS05320 | 0.0 | Capsule | Immune modulation | 96.99 | 99.79 | WP_011681177 |
| BHPDJJLM_32 | 14409 | 15101 | STER_RS05310 | 0.0 | Capsule | Immune modulation | 89.75 | 100.00 | WP_011681175 |
| BHPDJJLM_33 | 107050 | 108353 | eno | 0.0 | Streptococcal enolase | Exoenzyme | 88.02 | 99.54 | WP_000022832 |
| BHPDJJLM_48 | 375 | 1385 | plr/gapA | 0.0 | Streptococcal plasmin receptor/GAPDH | Adherence | 86.92 | 99.51 | WP_002986042 |
| BHPDJJLM_16 | 18896 | 19702 | SGO_RS05020 | 0.0 | Capsule | Immune modulation | 82.90 | 100.00 | WP_012000440 |
| BHPDJJLM_22 | 28463 | 29509 | rfbB | 0.0 | Capsule | Immune modulation | 80.71 | 100.00 | WP_009659423 |
| BHPDJJLM_8 | 2349 | 3632 | tig/ropA | 0.0 | Trigger factor | Stress survival | 80.65 | 99.77 | WP_000107753 |
| BHPDJJLM_16 | 24632 | 25330 | STER_RS07095 | 5.34e-154 | Capsule | Immune modulation | 81.15 | 70.35 | WP_011681444 |
| BHPDJJLM_32 | 17775 | 18011 | STR_RS05235* | 1.06e-120 | Capsule | Immune modulation | 100.00 | 100.00 | - |
| BHPDJJLM_16 | 23812 | 24278 | STER_RS07085 | 0.0 | Capsule | Immune modulation | 94.02 | 65.13 | WP_011681442 |
| BHPDJJLM_16 | 18159 | 18896 | SGO_RS05025 | 0.0 | Capsule | Immune modulation | 85.23 | 60.29 | WP_012000441 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| BHPDJJLM_22 | 68743 | 69726 | ldh(Sp_1220) | 0.0 | L-lactate dehydrogenase | 94.51 | 100.00 | AAK75326 |
| BHPDJJLM_11 | 13900 | 12827 | MntE | 0.0 | manganese homeostasis | 94.41 | 99.72 | ABF32167 |
| BHPDJJLM_33 | 24814 | 25782 | spr0084 | 0.0 | pathogenitcity related | 93.19 | 98.48 | AAK98888 |
| BHPDJJLM_44 | 10481 | 8178 | pfl2(Sp_0459) | 0.0 | formate acetyltransferase | 92.97 | 99.22 | AAK74619 |
| BHPDJJLM_29 | 63540 | 65021 | SPD_0310 | 0.0 | UPF0371 protein SPD_0310 | 92.11 | 100.00 | ABJ54480 |
| BHPDJJLM_39 | 11332 | 9086 | metE | 0.0 | methionine biosynthesis enzymes | 91.99 | 100.00 | AAK74738 |
| BHPDJJLM_20 | 19802 | 20794 | recA | 0.0 | DNA recombination and repair | 91.24 | 85.31 | AAL00560 |
| BHPDJJLM_13 | 121 | 1092 | prsA2 | 0.0 | ribose-phosphate pyrophosphokinase | 90.12 | 100.00 | ABF36968 |
| BHPDJJLM_44 | 124312 | 125463 | potA | 0.0 | ABC transporter ATP-binding protein-spermidine/putrescine transport | 89.06 | 99.74 | AAL00050 |
| BHPDJJLM_44 | 158785 | 160767 | uvrB | 0.0 | excinuclease ABC, B subunit | 88.96 | 99.70 | AE014259_2 |
| BHPDJJLM_22 | 52549 | 50819 | ptsI | 0.0 | phosphoenolpyruvate-protein phosphotransferase | 87.87 | 100.00 | AAK34199 |
| BHPDJJLM_25 | 26999 | 28477 | IMPDH | 0.0 | inosine-5'-monophosphate dehydrogenase | 87.63 | 100.00 | ADE32434 |
| BHPDJJLM_33 | 107050 | 108351 | Eno | 0.0 | enolase | 86.21 | 99.77 | ABP90468 |
| BHPDJJLM_25 | 41735 | 43627 | gidA | 0.0 | tRNA uridine 5-carboxymethylaminomethyl modification enzyme | 85.89 | 98.90 | ABP91129 |
| BHPDJJLM_39 | 6161 | 7870 | PGM | 0.0 | phosphoglucomutase | 83.89 | 99.65 | ACH87041 |
| BHPDJJLM_55 | 55035 | 54025 | pdh | 0.0 | pyruvate dehydrogenase | 83.09 | 99.70 | ABP91006 |
| BHPDJJLM_15 | 7432 | 6071 | mnmE | 0.0 | central tRNA-modifying GTPase | 82.24 | 99.56 | ABP90420 |
| BHPDJJLM_55 | 4705 | 6597 | PepO | 0.0 | endopeptidase | 80.03 | 100.00 | ABF32980 |
| BHPDJJLM_33 | 92620 | 93510 | bglB | 2.49e-179 | putative phospho--glucosidase | 88.55 | 99.66 | AAK33487 |
| BHPDJJLM_31 | 47015 | 47950 | SP_0676 | 1.90e-169 | transcription facot | 81.73 | 96.89 | AAK74821 |
| BHPDJJLM_39 | 8894 | 8037 | metF | 7.68e-167 | methionine biosynthesis enzymes | 86.36 | 99.31 | AAK74739 |
| BHPDJJLM_14 | 24471 | 23767 | covR | 1.26e-131 | responder protein | 84.68 | 100.00 | AAK71319 |
| BHPDJJLM_29 | 29859 | 29188 | rr01 | 6.55e-127 | response regulator | 84.38 | 99.56 | CAB54566 |
| BHPDJJLM_14 | 24471 | 23767 | walR | 9.06e-122 | DNA-binding response regulator | 80.85 | 100.00 | ANC99504 |
| BHPDJJLM_43 | 16141 | 16827 | CovR | 1.40e-119 | serves to repress GAS virulence factor-encoding genes | 80.79 | 100.00 | ACE75886 |
| BHPDJJLM_39 | 2208 | 1558 | CiaR | 1.24e-118 | two-component response regulator | 86.17 | 96.88 | AAK74935 |
| BHPDJJLM_39 | 2208 | 1558 | ciaR | 6.38e-116 | two component system response regulator | 83.87 | 96.02 | AIK75708 |
| BHPDJJLM_20 | 21091 | 21486 | SpxA2 | 4.30e-76 | transcriptional regulator | 90.91 | 100.00 | ERL21461 |
| BHPDJJLM_15 | 18790 | 19191 | SpxA1 | 1.05e-67 | transcriptional regulator | 80.60 | 100.00 | ERL19273 |
| BHPDJJLM_34 | 25398 | 25111 | spr0479 | 3.36e-49 | essential gene | 86.46 | 98.97 | AAK99283 |
| BHPDJJLM_17 | 9913 | 9659 | spr1327 | 1.05e-45 | essential gene | 95.29 | 100.00 | AAL00131 |
| BHPDJJLM_25 | 75379 | 75116 | spr0175 | 4.30e-42 | pathogenitcity related | 84.09 | 100.00 | AAK98979 |
| BHPDJJLM_25 | 74552 | 74286 | spr0177 | 1.11e-33 | essential gene | 84.27 | 88.12 | AAK98981 |
| BHPDJJLM_8 | 3790 | 4290 | RopE (M5005_Spy_1611) | 3.53e-76 | probable DNA-directed RNA polymerase subunit delta | 80.84 | 87.43 | AAK34603 |
| BHPDJJLM_44 | 10481 | 8184 | PFL (B9H01_RS01125) | 0.0 | formate C-acetyltransferase | 82.94 | 98.08 | MYN69560 |
| BHPDJJLM_55 | 19165 | 20184 | ilvC (SPD_0406) | 0.0 | ketol-acid reductoisomerase (NADP(+)) | 96.18 | 100.00 | ABJ55451 |