Genome ID:GCA_025449235.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 4 | 16.88 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNDFBEEH_1 | 2619135 | 2619989 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| JNDFBEEH_1 | 2602036 | 2603238 | blt | ARO:3003006 | blt | 99.25 | 100.00 | L32599.1 |
| JNDFBEEH_1 | 2375349 | 2376518 | bmr | ARO:3003007 | bmr | 99.49 | 100.00 | M33768.1 |
| JNDFBEEH_1 | 1353142 | 1353459 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| JNDFBEEH_1 | 1352804 | 1353142 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| JNDFBEEH_1 | 894478 | 897048 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
| JNDFBEEH_1 | 586316 | 587962 | vmlR | ARO:3004476 | vmlR | 98.91 | 100.18 | NC_000964.3 |
| JNDFBEEH_1 | 334731 | 335324 | tmrB | ARO:3003059 | tmrB | 99.49 | 100.00 | AL009126.3 |
| JNDFBEEH_1 | 284229 | 285662 | lmrB | ARO:3002813 | lmrB | 100.00 | 100.00 | JYFL01000006.1 |
| JNDFBEEH_1 | 271416 | 272336 | mphK | ARO:3004541 | mphK | 98.69 | 100.00 | CP010314.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JNDFBEEH_1 | 4059018 | 4060394 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 98.84 | 100.00 | D12567 |
| JNDFBEEH_1 | 2619135 | 2619989 | aadK | Streptomycin | 98.83 | 100.00 | M26879 |
| JNDFBEEH_1 | 271416 | 272336 | mph(K) | Spiramycin, Telithromycin | 98.26 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JNDFBEEH_1 | 4059021 | 4060394 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.91 | 100.00 | WP_063856081.1 |
| JNDFBEEH_1 | 586319 | 587962 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.91 | 100.00 | WP_003234144.1 |
| JNDFBEEH_1 | 271416 | 272333 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.69 | 100.00 | WP_003246254.1 |
| JNDFBEEH_1 | 2619138 | 2619989 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| JNDFBEEH_1 | 4056503 | 4057021 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| JNDFBEEH_1 | 2062987 | 2065575 | rphC | rifamycin-inactivating phosphotransferase RphC | INTERNAL_STOP | 80.14 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JNDFBEEH_1 | 3580200 | 3581381 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| JNDFBEEH_1 | 3579736 | 3580185 | capC | 0.0 | Capsule | Immune modulation | 99.56 | 100.00 | NP_391470 |
| JNDFBEEH_1 | 3175125 | 3175910 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| JNDFBEEH_1 | 3164133 | 3171269 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.31 | 100.00 | NP_391076 |
| JNDFBEEH_1 | 3578575 | 3579717 | capA | 0.0 | Capsule | Immune modulation | 99.21 | 100.00 | NP_391469 |
| JNDFBEEH_1 | 3173903 | 3175099 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.08 | 100.00 | NP_391079 |
| JNDFBEEH_1 | 2013523 | 2015286 | dep/capD | 0.0 | Capsule | Immune modulation | 98.92 | 100.00 | NP_389723 |
| JNDFBEEH_1 | 2176782 | 2177423 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 98.91 | 100.00 | NP_390062 |
| JNDFBEEH_1 | 3171289 | 3172227 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.30 | 100.00 | NP_391077 |
| JNDFBEEH_1 | 3172255 | 3173874 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.41 | 100.00 | NP_391078 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JNDFBEEH_1 | 132416 | 133552 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| JNDFBEEH_1 | 18600 | 19469 | pdxS | 3.03e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| JNDFBEEH_1 | 1663175 | 1663951 | CodY | 3.31e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| JNDFBEEH_1 | 3425489 | 3426058 | ClpP | 2.46e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |