Genome ID:GCA_026319435.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 7 | 7.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EHFOKGKC_1 | 85827 | 86876 | clbA | ARO:3002814 | clbA | 99.43 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EHFOKGKC_1 | 85827 | 86862 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.61 | 98.67 | KR610408 |
| EHFOKGKC_25 | 356903 | 358279 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 86.78 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EHFOKGKC_1 | 85827 | 86873 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.43 | 100.00 | WP_012116915.1 |
| EHFOKGKC_25 | 356903 | 358273 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.65 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| EHFOKGKC_14 | 275644 | 276825 | capB | 0.0 | Capsule | Immune modulation | 81.96 | 99.66 | NP_391471 |
| EHFOKGKC_14 | 275180 | 275629 | capC | 2.87e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| EHFOKGKC_12 | 31868 | 33004 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| EHFOKGKC_19 | 4502 | 5371 | pdxS | 1.38e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| EHFOKGKC_34 | 186511 | 185735 | CodY | 3.66e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| EHFOKGKC_41 | 36910 | 36518 | spxA1 | 6.31e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| EHFOKGKC_1 | 72254 | 72451 | CspA | 8.27e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| EHFOKGKC_23 | 11360 | 11554 | CspD | 3.10e-29 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| EHFOKGKC_23 | 11360 | 11557 | CspB | 6.43e-29 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| EHFOKGKC_1 | 72254 | 72448 | CspR | 1.08e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| EHFOKGKC_2 | 1384 | 2256 | lipA (SAUSA300_0829) | 4.02e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |