Genome ID：GCA_026781795.1

Potential risk score of uploaded strain

ARGs	VFs	PGs	PPRS
2	20	35	40.36

CARD

Query ID	Begin	End	ARO name	ARO accession	CARD name	Identity	Coverage	Accession no.
No hit found

Resfinder

Query ID	Begin	End	Resistance gene	Phenotype	Identity	Coverage	Accession no.
CPNEBNBK_11	199657	201120	msr(D)	Erythromycin, Azithromycin, Telithromycin, Quinupristin, Pristinamycin IA, Virginiamycin S	100.00	100.00	AF274302
CPNEBNBK_11	201240	202457	mef(A)	Erythromycin, Azithromycin	99.84	100.00	U83667

AMRFinderPlus

Query ID	Begin	End	Gene symbol	Sequence name	Method	Identity	Coverage	Accession no.
CPNEBNBK_11	199660	201120	msr(D)	ABC-F type ribosomal protection protein Msr(D)	EXACTX	100.00	100.00	WP_000420313.1
CPNEBNBK_11	201243	202457	mef(A)	macrolide efflux MFS transporter Mef(A)	BLASTX	99.75	100.00	WP_000417519.1

Virulence Factor Database (VFDB)

Query ID	qstart	qend	Gene name	e-value	VF name	VF category	Identity	Coverage	Accession no.
CPNEBNBK_1	155825	156676	rfbD	0.0	Capsule	Immune modulation	95.31	100.00	WP_014621820
CPNEBNBK_31	67296	68027	STR_RS05260	0.0	Capsule	Immune modulation	94.26	100.00	WP_011227248
CPNEBNBK_31	67296	68027	STU_RS14645	0.0	Capsule	Immune modulation	93.58	100.00	WP_011226048
CPNEBNBK_31	67296	68027	STER_RS05315	0.0	Capsule	Immune modulation	93.31	100.00	WP_011681176
CPNEBNBK_1	162004	163760	STU_RS16230	0.0	Capsule	Immune modulation	92.60	98.43	WP_011226325
CPNEBNBK_1	157998	158954	STU_RS16250	0.0	Capsule	Immune modulation	92.48	100.00	WP_011226328
CPNEBNBK_1	158938	159747	STU_RS16245	0.0	Capsule	Immune modulation	92.23	99.88	WP_002948020
CPNEBNBK_1	159747	160952	STU_RS16240	0.0	Capsule	Immune modulation	92.21	100.00	WP_011226326
CPNEBNBK_1	156853	158001	STU_RS16255	0.0	Capsule	Immune modulation	91.56	99.91	WP_041828290
CPNEBNBK_31	68028	69488	STER_RS05320	0.0	Capsule	Immune modulation	91.40	99.86	WP_011681177
CPNEBNBK_13	24425	25018	STR_RS05880	0.0	Capsule	Immune modulation	91.08	100.00	WP_011226149
CPNEBNBK_1	160973	162007	STU_RS16235	0.0	Capsule	Immune modulation	91.00	99.15	WP_002948022
CPNEBNBK_13	24425	25018	STER_RS06030	0.0	Capsule	Immune modulation	90.91	100.00	WP_011226149
CPNEBNBK_13	24425	25018	STU_RS15260	0.0	Capsule	Immune modulation	90.91	100.00	WP_011226149
CPNEBNBK_31	68028	69488	STU_RS14650	0.0	Capsule	Immune modulation	90.78	100.00	WP_011226049
CPNEBNBK_11	143123	144781	fbp54	0.0	FBPs	Adherence	90.43	99.88	WP_011227179
CPNEBNBK_31	68028	69488	STR_RS05265	0.0	Capsule	Immune modulation	90.10	100.00	WP_041827043
CPNEBNBK_31	66595	67287	STU_RS14640	0.0	Capsule	Immune modulation	89.90	100.00	WP_011226047
CPNEBNBK_1	95585	96490	cbpD	0.0	Autolysin	Exoenzyme	89.84	93.50	WP_082302295
CPNEBNBK_31	66595	67287	STR_RS05255	0.0	Capsule	Immune modulation	89.61	100.00	WP_011227247
CPNEBNBK_31	66595	67287	STER_RS05310	0.0	Capsule	Immune modulation	89.47	100.00	WP_011681175
CPNEBNBK_17	51723	53026	eno	0.0	Streptococcal enolase	Exoenzyme	88.17	99.54	WP_000022832
CPNEBNBK_15	14214	15227	plr/gapA	0.0	Streptococcal plasmin receptor/GAPDH	Adherence	85.67	99.90	WP_002986042
CPNEBNBK_34	17141	17902	srtA	0.0	Sortase A	Exoenzyme	84.40	99.87	-
CPNEBNBK_13	25288	26334	rfbB	0.0	Capsule	Immune modulation	83.59	99.90	WP_002263087
CPNEBNBK_5	41344	42627	tig/ropA	0.0	Trigger factor	Stress survival	80.84	99.61	WP_000107753
CPNEBNBK_13	23556	24425	rfbA	0.0	Capsule	Immune modulation	80.28	99.77	WP_002904719
CPNEBNBK_31	65915	66585	STU_RS14635	1.27e-149	Capsule	Immune modulation	81.13	90.28	WP_011226046
CPNEBNBK_31	65915	66585	STER_RS05305	5.89e-148	Capsule	Immune modulation	80.98	90.28	WP_011681174
CPNEBNBK_31	65915	66585	STR_RS05250	5.97e-138	Capsule	Immune modulation	80.09	89.20	WP_011227246

VirulenceFinder

Query ID	Begin	End	Database	Virulence factor	Protein function	Identity	Coverage	Accession no.
No hit found

PHI-base

Query ID	qstart	qend	Gene name	e-value	Function	Identity	Coverage	Gene ID
CPNEBNBK_34	20591	21574	ldh(Sp_1220)	0.0	L-lactate dehydrogenase	96.95	100.00	AAK75326
CPNEBNBK_34	9004	7931	MntE	0.0	manganese homeostasis	95.81	99.72	ABF32167
CPNEBNBK_32	149302	146996	pfl2(Sp_0459)	0.0	formate acetyltransferase	94.54	99.22	AAK74619
CPNEBNBK_33	98731	100212	SPD_0310	0.0	UPF0371 protein SPD_0310	93.32	100.00	ABJ54480
CPNEBNBK_11	10105	12351	metE	0.0	methionine biosynthesis enzymes	92.79	100.00	AAK74738
CPNEBNBK_7	41444	40476	spr0084	0.0	pathogenitcity related	92.26	98.48	AAK98888
CPNEBNBK_9	3855	4826	prsA2	0.0	ribose-phosphate pyrophosphokinase	91.67	100.00	ABF36968
CPNEBNBK_33	13585	7022	PrtA	0.0	serine protease	90.10	101.96	ABJ55268
CPNEBNBK_3	99092	100822	ptsI	0.0	phosphoenolpyruvate-protein phosphotransferase	89.95	100.00	AAK34199
CPNEBNBK_1	143649	145637	uvrB	0.0	excinuclease ABC, B subunit	89.44	100.00	AE014259_2
CPNEBNBK_20	44074	45225	potA	0.0	ABC transporter ATP-binding protein-spermidine/putrescine transport	89.32	99.74	AAL00050
CPNEBNBK_12	25768	27246	IMPDH	0.0	inosine-5'-monophosphate dehydrogenase	87.83	100.00	ADE32434
CPNEBNBK_17	51723	53024	Eno	0.0	enolase	86.44	99.77	ABP90468
CPNEBNBK_4	14079	12187	gidA	0.0	tRNA uridine 5-carboxymethylaminomethyl modification enzyme	85.58	98.90	ABP91129
CPNEBNBK_24	12549	13640	recA	0.0	DNA recombination and repair	84.91	95.36	AAL00560
CPNEBNBK_11	15269	13560	PGM	0.0	phosphoglucomutase	84.59	99.65	ACH87041
CPNEBNBK_28	22037	23047	pdh	0.0	pyruvate dehydrogenase	82.79	99.70	ABP91006
CPNEBNBK_11	158550	157189	mnmE	0.0	central tRNA-modifying GTPase	82.67	99.56	ABP90420
CPNEBNBK_17	37317	38207	bglB	8.90e-179	putative phospho--glucosidase	87.88	99.66	AAK33487
CPNEBNBK_11	55230	54280	SP_0676	3.04e-170	transcription facot	81.39	98.45	AAK74821
CPNEBNBK_11	12541	13398	metF	2.35e-168	methionine biosynthesis enzymes	86.71	99.31	AAK74739
CPNEBNBK_3	62225	61368	mtsA	2.88e-152	substrate-binding lipoprotein of manganese transporter	80.49	92.86	AIK76191
CPNEBNBK_25	3852	3148	covR	1.21e-128	responder protein	85.53	100.00	AAK71319
CPNEBNBK_33	37467	36796	rr01	3.16e-127	response regulator	85.27	99.56	CAB54566
CPNEBNBK_11	19934	20605	ciaR	9.21e-125	two component system response regulator	85.71	99.12	AIK75708
CPNEBNBK_11	19934	20602	CiaR	1.14e-124	two-component response regulator	87.00	99.55	AAK74935
CPNEBNBK_25	3852	3148	walR	3.66e-122	DNA-binding response regulator	82.13	100.00	ANC99504
CPNEBNBK_22	55154	54468	CovR	9.93e-121	serves to repress GAS virulence factor-encoding genes	82.10	100.00	ACE75886
CPNEBNBK_24	13814	14209	SpxA2	1.40e-76	transcriptional regulator	91.67	100.00	ERL21461
CPNEBNBK_11	170019	170420	SpxA1	1.31e-69	transcriptional regulator	82.09	100.00	ERL19273
CPNEBNBK_6	13923	14336	GrpE	1.57e-68	protein grpE	81.88	80.59	ABP89267
CPNEBNBK_22	31946	31659	spr0479	6.49e-48	essential gene	85.42	98.97	AAK99283
CPNEBNBK_10	32876	33130	spr1327	1.85e-46	essential gene	94.12	100.00	AAL00131
CPNEBNBK_18	35372	35635	spr0175	3.03e-43	pathogenitcity related	85.23	100.00	AAK98979
CPNEBNBK_18	36197	36463	spr0177	6.73e-42	essential gene	83.15	88.12	AAK98981
CPNEBNBK_5	41177	40686	RopE (M5005_Spy_1611)	2.13e-73	probable DNA-directed RNA polymerase subunit delta	83.54	85.86	AAK34603
CPNEBNBK_32	149302	147002	PFL (B9H01_RS01125)	0.0	formate C-acetyltransferase	83.36	98.08	MYN69560
CPNEBNBK_28	58169	57150	ilvC (SPD_0406)	0.0	ketol-acid reductoisomerase (NADP(+))	85.88	100.00	ABJ55451
CPNEBNBK_11	121669	122208	pnuC	3.82e-99	NAD salvage pathway importer	88.89	66.91	AAK75931