Genome ID:GCA_026799655.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 7 | 17.83 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OPHIPIDH_1 | 1797269 | 1797607 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| OPHIPIDH_1 | 1796952 | 1797269 | ykkD | ARO:3003064 | ykkD | 100.00 | 100.00 | AL009126.1 |
| OPHIPIDH_1 | 678303 | 679472 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| OPHIPIDH_1 | 455953 | 457155 | blt | ARO:3003006 | blt | 100.00 | 100.00 | L32599.1 |
| OPHIPIDH_1 | 437592 | 438446 | aadK | ARO:3002627 | aadK | 100.00 | 100.00 | AL009126.1 |
| OPHIPIDH_3 | 358873 | 359793 | mphK | ARO:3004541 | mphK | 100.00 | 100.00 | CP010314.1 |
| OPHIPIDH_3 | 345539 | 346978 | lmrB | ARO:3002813 | lmrB | 99.79 | 100.42 | JYFL01000006.1 |
| OPHIPIDH_3 | 295882 | 296475 | tmrB | ARO:3003059 | tmrB | 100.00 | 100.00 | AL009126.3 |
| OPHIPIDH_3 | 29253 | 30896 | vmlR | ARO:3004476 | vmlR | 100.00 | 100.00 | NC_000964.3 |
| OPHIPIDH_4 | 27546 | 30116 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 100.00 | 100.00 | AL009126.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OPHIPIDH_1 | 437592 | 438446 | aadK | Streptomycin | 100.00 | 100.00 | M26879 |
| OPHIPIDH_3 | 358873 | 359793 | mph(K) | Spiramycin, Telithromycin | 100.00 | 100.00 | NC_000964 |
| OPHIPIDH_5 | 36557 | 37933 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 100.00 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OPHIPIDH_1 | 437592 | 438443 | aadK | aminoglycoside 6-adenylyltransferase AadK | EXACTX | 100.00 | 100.00 | WP_003229862.1 |
| OPHIPIDH_3 | 358876 | 359793 | mphK | macrolide 2'-phosphotransferase MphK | EXACTX | 100.00 | 100.00 | WP_003246254.1 |
| OPHIPIDH_5 | 39933 | 40451 | satA | streptothricin N-acetyltransferase SatA | EXACTX | 100.00 | 100.00 | WP_003242546.1 |
| OPHIPIDH_5 | 36557 | 37930 | tet(L) | tetracycline efflux MFS transporter Tet(L) | EXACTX | 100.00 | 100.00 | WP_003242953.1 |
| OPHIPIDH_3 | 29253 | 30893 | vmlR | ABC-F type ribosomal protection protein VmlR | EXACTX | 100.00 | 100.00 | WP_003234144.1 |
| OPHIPIDH_1 | 1120195 | 1122789 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.15 | 99.88 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| OPHIPIDH_2 | 398240 | 399382 | capA | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | NP_391469 |
| OPHIPIDH_2 | 396576 | 397757 | capB | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | NP_391471 |
| OPHIPIDH_2 | 397772 | 398221 | capC | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | NP_391470 |
| OPHIPIDH_1 | 1167684 | 1169447 | dep/capD | 0.0 | Capsule | Immune modulation | 100.00 | 100.00 | NP_389723 |
| OPHIPIDH_2 | 804907 | 805692 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391080 |
| OPHIPIDH_2 | 808590 | 809528 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391077 |
| OPHIPIDH_2 | 805718 | 806914 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391079 |
| OPHIPIDH_2 | 806943 | 808562 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391078 |
| OPHIPIDH_2 | 809548 | 816684 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 100.00 | 100.00 | NP_391076 |
| OPHIPIDH_1 | 878183 | 878824 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 100.00 | 100.00 | NP_390062 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OPHIPIDH_6 | 28208 | 27072 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| OPHIPIDH_8 | 4392 | 5261 | pdxS | 1.13e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| OPHIPIDH_1 | 1484005 | 1483229 | CodY | 1.80e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| OPHIPIDH_2 | 550969 | 550400 | ClpP | 5.52e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| OPHIPIDH_1 | 1946430 | 1946038 | spxA1 | 5.34e-69 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| OPHIPIDH_7 | 20900 | 21142 | SpoVG | 2.75e-38 | RNA-binding protein | 80.25 | 79.41 | AAT02994 |
| OPHIPIDH_3 | 76368 | 76171 | CspA | 1.98e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |