Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 2 | 6 | 7.48 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCFPBBNC_1 | 289535 | 290581 | clbA | ARO:3002814 | clbA | 93.35 | 99.71 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LCFPBBNC_1 | 289535 | 290578 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 89.00 | 99.33 | KR610408 |
| LCFPBBNC_3 | 2135701 | 2137077 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.22 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LCFPBBNC_1 | 289535 | 290578 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 92.82 | 99.71 | WP_012116915.1 |
| LCFPBBNC_3 | 2135707 | 2137077 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 87.31 | 99.78 | WP_003242953.1 |
| LCFPBBNC_1 | 287266 | 287784 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 84.39 | 100.00 | WP_003242546.1 |
| LCFPBBNC_3 | 1497890 | 1500484 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.57 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| LCFPBBNC_3 | 467470 | 468651 | capB | 0.0 | Capsule | Immune modulation | 82.21 | 99.66 | NP_391471 |
| LCFPBBNC_3 | 468666 | 469115 | capC | 9.62e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LCFPBBNC_1 | 612318 | 613454 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| LCFPBBNC_3 | 2578663 | 2577794 | pdxS | 1.02e-150 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| LCFPBBNC_3 | 1291319 | 1292095 | CodY | 2.15e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| LCFPBBNC_2 | 51212 | 51604 | spxA1 | 6.50e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| LCFPBBNC_1 | 272994 | 273191 | CspA | 1.17e-31 | cold shock protein | 92.42 | 100.00 | CAA62903 |
| LCFPBBNC_2 | 328635 | 328441 | CspB | 1.02e-26 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| LCFPBBNC_1 | 272994 | 273188 | CspR | 5.80e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |