Genome ID:GCA_028329115.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 1 | 4.12 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LLOCDOJJ_12 | 16016 | 17941 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| LLOCDOJJ_32 | 862 | 1827 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| LLOCDOJJ_23 | 113 | 907 | ErmF | ARO:3000498 | ErmF | 97.37 | 99.25 | M17124.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LLOCDOJJ_12 | 16016 | 17941 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
| LLOCDOJJ_32 | 862 | 1827 | cfxA3 | Ampicillin | 99.79 | 100.00 | AF472622 |
| LLOCDOJJ_32 | 862 | 1827 | cfxA4 | Unknown Beta-lactam | 99.79 | 100.00 | AY769933 |
| LLOCDOJJ_32 | 862 | 1827 | cfxA5 | Unknown Beta-lactam | 99.79 | 100.00 | AY769934 |
| LLOCDOJJ_32 | 862 | 1827 | cfxA | Cefoxitin, Ampicillin | 99.79 | 100.00 | U38243 |
| LLOCDOJJ_23 | 113 | 907 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 98.63 | 99.25 | M17808 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LLOCDOJJ_32 | 862 | 1821 | cfxA | CfxA family broad-spectrum class A beta-lactamase | BLASTX | 100.00 | 99.69 | WP_004339683.1 |
| LLOCDOJJ_12 | 16019 | 17941 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
| LLOCDOJJ_23 | 1120 | 1959 | estT | macrolide hydrolase EstT | BLASTX | 98.58 | 100.00 | WP_185148407.1 |
| LLOCDOJJ_23 | 113 | 904 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 97.74 | 100.00 | WP_002682030.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LLOCDOJJ_33 | 172490 | 170910 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |