Genome ID:GCA_028807155.1
Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 8 | 18.25 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ACCHCDKJ_24 | 490957 | 491295 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| ACCHCDKJ_24 | 490640 | 490957 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| ACCHCDKJ_47 | 304883 | 305737 | aadK | ARO:3002627 | aadK | 98.24 | 100.00 | AL009126.1 |
| ACCHCDKJ_47 | 286214 | 287416 | blt | ARO:3003006 | blt | 99.00 | 100.00 | L32599.1 |
| ACCHCDKJ_61 | 256484 | 259054 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.77 | 100.00 | AL009126.3 |
| ACCHCDKJ_128 | 108123 | 109043 | mphK | ARO:3004541 | mphK | 97.71 | 100.00 | CP010314.1 |
| ACCHCDKJ_128 | 94790 | 96229 | lmrB | ARO:3002813 | lmrB | 99.37 | 100.42 | JYFL01000006.1 |
| ACCHCDKJ_47 | 59203 | 60372 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| ACCHCDKJ_128 | 45158 | 45751 | tmrB | ARO:3003059 | tmrB | 100.00 | 100.00 | AL009126.3 |
| ACCHCDKJ_6 | 29204 | 30850 | vmlR | ARO:3004476 | vmlR | 98.54 | 100.18 | NC_000964.3 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ACCHCDKJ_110 | 36333 | 37709 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 98.84 | 100.00 | X08034 |
| ACCHCDKJ_47 | 304885 | 305737 | aadK | Streptomycin | 98.71 | 99.77 | M26879 |
| ACCHCDKJ_128 | 108123 | 109043 | mph(K) | Spiramycin, Telithromycin | 97.72 | 100.00 | NC_000964 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ACCHCDKJ_110 | 36333 | 37706 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 98.69 | 100.00 | WP_003242953.1 |
| ACCHCDKJ_6 | 29204 | 30847 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.54 | 100.00 | WP_003234144.1 |
| ACCHCDKJ_47 | 304886 | 305737 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.24 | 100.00 | WP_003229862.1 |
| ACCHCDKJ_128 | 108126 | 109043 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 97.71 | 100.00 | WP_003246254.1 |
| ACCHCDKJ_110 | 39662 | 40180 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| ACCHCDKJ_5 | 56284 | 58881 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.60 | 100.00 | WP_087347987.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| ACCHCDKJ_133 | 109285 | 110223 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.68 | 100.00 | NP_391077 |
| ACCHCDKJ_110 | 520995 | 522176 | capB | 0.0 | Capsule | Immune modulation | 99.66 | 100.00 | NP_391471 |
| ACCHCDKJ_133 | 110251 | 111870 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.26 | 100.00 | NP_391078 |
| ACCHCDKJ_133 | 113121 | 113906 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.24 | 100.00 | NP_391080 |
| ACCHCDKJ_5 | 152431 | 153072 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.22 | 100.00 | NP_390062 |
| ACCHCDKJ_110 | 522659 | 523801 | capA | 0.0 | Capsule | Immune modulation | 98.95 | 100.00 | NP_391469 |
| ACCHCDKJ_133 | 111899 | 113095 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.91 | 100.00 | NP_391079 |
| ACCHCDKJ_5 | 9343 | 11106 | dep/capD | 0.0 | Capsule | Immune modulation | 98.87 | 100.00 | NP_389723 |
| ACCHCDKJ_133 | 102129 | 109265 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.82 | 100.00 | NP_391076 |
| ACCHCDKJ_110 | 522191 | 522640 | capC | 0.0 | Capsule | Immune modulation | 98.67 | 100.00 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ACCHCDKJ_57 | 28062 | 26926 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| ACCHCDKJ_121 | 11310 | 10441 | pdxS | 1.12e-151 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| ACCHCDKJ_24 | 181094 | 180318 | CodY | 7.45e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| ACCHCDKJ_133 | 375409 | 375978 | ClpP | 2.95e-99 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
| ACCHCDKJ_24 | 642452 | 642060 | spxA1 | 5.85e-70 | redox-responsive transcription factor | 83.97 | 100.00 | AAF21893 |
| ACCHCDKJ_24 | 642452 | 642060 | spx | 3.49e-68 | essential gene which is a thiol/oxidative stress sensor | 80.15 | 100.00 | BAB57159 |
| ACCHCDKJ_93 | 34715 | 34473 | SpoVG | 7.52e-39 | RNA-binding protein | 81.48 | 79.41 | AAT02994 |
| ACCHCDKJ_6 | 77605 | 77408 | CspA | 9.24e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| ACCHCDKJ_5 | 165036 | 165230 | CspD | 1.79e-28 | cold shock protein | 81.54 | 98.48 | CAC99957 |