Potential risk score of uploaded strain
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 2 | 7 | 7.55 |
CARD
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KNCNEMLF_12 | 354449 | 355498 | clbA | ARO:3002814 | clbA | 99.43 | 100.00 | CP006845.1 |
Resfinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KNCNEMLF_12 | 354449 | 355484 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 88.80 | 98.67 | KR610408 |
| KNCNEMLF_10 | 377547 | 378923 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 86.78 | 100.00 | X08034 |
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KNCNEMLF_12 | 354449 | 355495 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 99.43 | 100.00 | WP_012116915.1 |
| KNCNEMLF_10 | 377547 | 378917 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.65 | 99.78 | WP_003242953.1 |
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| KNCNEMLF_1 | 542590 | 543771 | capB | 0.0 | Capsule | Immune modulation | 81.87 | 99.66 | NP_391471 |
| KNCNEMLF_1 | 542126 | 542575 | capC | 3.84e-114 | Capsule | Immune modulation | 83.59 | 99.78 | NP_391470 |
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KNCNEMLF_15 | 31767 | 32903 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| KNCNEMLF_3 | 12498 | 11629 | pdxS | 1.36e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| KNCNEMLF_11 | 463052 | 463828 | CodY | 1.04e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| KNCNEMLF_13 | 43036 | 42644 | spxA1 | 6.50e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| KNCNEMLF_12 | 340869 | 341066 | CspA | 2.39e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| KNCNEMLF_13 | 257792 | 257986 | CspB | 6.19e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| KNCNEMLF_12 | 340869 | 341063 | CspR | 3.12e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| KNCNEMLF_1 | 139197 | 138325 | lipA (SAUSA300_0829) | 3.33e-162 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |